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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACTGAGCAACCAAAAGTACAGGGAGTTCAAAGAAGAGTTCTCTGATGTTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtactgccttctgccctcaccactctttcaattgcttgtacatttatgcttggaacttaaaaccattccctgacaatgcag

Basic information

species Zea mays
transcript GRMZM2G040995_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 2
GGCACTGAGCAACCAAAAGTACAGGGAGTTCAAAGAAGAGTTCTCTGATGTTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtactgccttctgccctcaccactctttcaattgcttgtacatttatgcttggaacttaa------aaccattccctgacaatgcag
|||  |||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| || ||| |||||  |     |  ||| |  | ||||| || |  |    ||| |||| |      ||        || | |   |||| |||||||
GGCTTTGAGTAACCAAAAGTACAGGGAATTCAAAGAAGAGTTCTCTGATGTCGGCCTCATGACTGGGGATGTTACTATTGAGCCAAATGCATCTTGTTTGgtatgg-----tatccttatgattctttgaaatcatcc--catctatgttaaatgttttgttacttaatcttgatctgaaaatgcag

upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 2
GGCACTGAGCAACCAAAAGTACAGGGAGTTCAAAGAAGAGTTCTCTGATGTTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtac-tgccttctgccct---caccactctttcaattgcttgtac-atttatgcttggaacttaaaaccattccctgacaatgcag
|||||| || || || |||||||| || || ||||||||||| |||||||||||| | |||||||||||||| || || || || |||||||| ||||| |||  | |||| |   ||   ||    | | |||   | || |   ||||    || |  ||||      |   ||     | |||
GGCACTTAGTAATCAGAAGTACAGAGATTTTAAAGAAGAGTTTTCTGATGTTGGTTTGATGACTGGGGATGTGACTATCGATCCTAATGCCTCTTGTCTTgtaagtaccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatttgttcttagttttgtgttctt-tgtttcag

upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 2
GGCACTGAGCAACCAAAAGTACAGGGAGTTCAAAGAAGAGTTCTCTGATGTTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtactgccttctgccctcaccac-----tctttcaattgcttgtacattt---atgcttg-gaacttaaaaccattccctgacaatgcag------
|||||| |||||||||||||| || || || |||||||| ||||| ||||||||| | ||||||||||||||||| |||||||| ||||| || || ||||||   ||   |  | |    |      | |||    |  |||  | |||   ||| ||  | | ||        |   | | | | | |      
GGCACTCAGCAACCAAAAGTATAGAGAATTTAAAGAAGAATTCTCAGATGTTGGTTTGATGACTGGGGATGTCACTATTGAGCCCAATGCTTCTTGCCTGgtaggcccagttatcatttatatatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087134|gb|DV515527.1|DV515527
EST:     TTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTG                         GTCATGACCACAGAAATTTGGCGGAGCATGCAATACAAGGGATCTGAGGTC
genomic: TTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtactgcctt ... gacaatgcagGTCATGACCACAGAAATTTGGCGGAGCATGCAATACAAGGGATCTGAGGTC