Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttgatttagttatcttggtgcttcctgactagactattgctaatgaagatattgcttgcag

Basic information

species Zea mays
transcript GRMZM2G039954_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211071792|gb|FK959263.1|FK959263
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211071798|gb|FK959269.1|FK959269
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452548|gb|FK959198.1|FK959198
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211456807|gb|FK959226.1|FK959226
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066312|gb|FK959235.1|FK959235
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGAYAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452545|gb|FK959195.1|FK959195
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211450408|gb|FK959184.1|FK959184
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAA
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211454673|gb|FK959208.1|FK959208
EST:     CCGATCCTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGCACAAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211454670|gb|FK959205.1|FK959205
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211071794|gb|FK959265.1|FK959265
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066314|gb|FK959237.1|FK959237
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211302619|gb|FL366312.1|FL366312
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211074537|gb|FK959287.1|FK959287
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGA-
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|116824448|gb|EC868068.1|EC868068
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066323|gb|FK959246.1|FK959246
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATNATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211069063|gb|FK959256.1|FK959256
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211074529|gb|FK959279.1|FK959279
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAR
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211450409|gb|FK959185.1|FK959185
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211071802|gb|FK959273.1|FK959273
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAR
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066317|gb|FK959240.1|FK959240
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211450407|gb|FK959183.1|FK959183
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATWAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211071805|gb|FK959276.1|FK959276
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211071803|gb|FK959274.1|FK959274
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452538|gb|FK959188.1|FK959188
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211069062|gb|FK959255.1|FK959255
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGA-
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452540|gb|FK959190.1|FK959190
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGASSA-
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211069056|gb|FK959249.1|FK959249
EST:     CCGATCCTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGCACAAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452543|gb|FK959193.1|FK959193
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGA-
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066319|gb|FK959242.1|FK959242
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGA-
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452544|gb|FK959194.1|FK959194
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCC
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCC
EST: gi|211452541|gb|FK959191.1|FK959191
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452550|gb|FK959200.1|FK959200
EST:     CCGATCCTGGAACATCCAGCAGAGGAACCAG--ATCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGCACAAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066311|gb|FK959234.1|FK959234
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211454677|gb|FK959212.1|FK959212
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211452546|gb|FK959196.1|FK959196
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAA
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|116813303|gb|EC855734.1|EC855734
EST:     CGATCTTGGAACATCCAGCAGAGTGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CGATCTTGGAACATCCAGCAGAG-GAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211009739|gb|FL437062.1|FL437062
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211066318|gb|FK959241.1|FK959241
EST:     CCGATCTTGGAACATCCAGCAGARGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATNATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211450404|gb|FK959180.1|FK959180
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211456803|gb|FK959222.1|FK959222
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
EST: gi|211074535|gb|FK959285.1|FK959285
EST:     CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAG                         GAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG
genomic: CCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttga ... ttgcttgcagGAGGCAACTAAGGGCGATAATAAGGACTCGTCCGGTGGACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGATCTTGGAACATCCAGCAGAGGAACCAGACAGCGATCACGAGTTCAGgtgtgtttgatttagttatcttggtgcttcctgactagactattgctaatgaagatattgcttgcag

- - - - - - - - - -  AGAGGA