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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTTCTCCGGTCTCCTTAGGAGCTCCGCGTCGCTGCCGATGCGCTGGAATGCCACCTCCGACGAATTCATGTCCGCCGTCTCCTTCAGGAACCACGCGgtacgtgcctgcctgcccccgggccggccgatcgatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaacacgatcgaatggcttggggattcacatgtctgcgccgctgctgcccctggctgcctgactcgcctgcttgtgcatcgatcag

Basic information

species Zea mays
transcript GRMZM2G039723_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039723_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g38600.1 (Oryza sativa), 5'ss of exon 2
---CGAGTTCTCCGGTCTCCTTAGGAGCTCCGCGTCGCTGCCGATGCGCTGGAATGCCACCTCCGACGAATTCATGTCCGCCGTCTCCTTCAGGAACCACGCGgtacgtgcctgcctgcccccgggccggccgatcgatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaacacgatcgaatggcttggggattcacatgtctgcgccgctgctgcccctggctgcctgactcgcctgcttgtgcatcgatcag
    |||||||||||   ||| ||||||||  ||||||||||| ||||  ||||||||||||||||||| ||||||  ||| ||||||||||||| ||||||||||||||| ||                 | ||  | | |    |  |  ||  || |||| | |  ||  |||||  |  ||     | |  |                                                                          
GTCGGAGTTCTCCGG---CCTGAGGAGCTCGTCGTCGCTGCCGCTGCGGCGGAATGCCACCTCCGACGACTTCATGAACGCGGTCTCCTTCAGGACCCACGCGgtacgtgcgtg--------------aagcaatgcaccggaaaac--ttttgttgcgtcgtcgaggcggcgtgtgcgtgacgcggggtgttgaag-------------------------------------------------------------------------

upper sequence: GRMZM2G039723_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 5'ss of exon 2
---CGAGTTCTCCGGTCTCCTTAGGAGCTCCGCGTCGCTGCCGATGCGCTGGAATGCCACCTCCGACGAATTCATGTCCGCCGTCTCCTTCAGGAACCACGCGgtacgtgcctgcctgcccccgggccggccgatcgatccgtgcgcggtcgtgccgcatcgtagcgtaggaatgtgctagtagcaacacgatcgaatggcttggggattcacatgtctgcgccgctgctgcccctggctgcctgactcgcctgcttgtgcatcgatcag
    |||||||||||   ||| ||||||||  ||||||||||| ||||  ||||||||||||||||||| ||||||  ||| ||||||||||||| ||||||||||||||| ||                 | ||  | | |    |  |  ||  || |||| | |  ||  |||||  |  ||     | | |||  | ||| |   |  |  |   |||| |                                             
GTCGGAGTTCTCCGG---CCTGAGGAGCTCGTCGTCGCTGCCGCTGCGGCGGAATGCCACCTCCGACGACTTCATGAACGCGGTCTCCTTCAGGACCCACGCGgtacgtgcgtg--------------aagcaatgcaccggaaaac--ttttgttgcgtcgtcgaggcggcgtgtgcgtgacgcggggtg-ttgaa--gtttgtg---ttgcg-gcgggcgcag---------------------------------------------