1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAGTAAGAATATATTCTTGTTGAAGTCACTAGATGATCTGTTTCAGAAGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcctatttttccattggttttatacttttatttttgatttgagaaactgatttaggtcctgtttggaagaaacccagtttttaagaaacccgt...
species | Zea mays |
transcript | GRMZM2G039711_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|76010570|gb|DT937740.1|DT937740
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCTTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|78122387|gb|DV540771.1|DV540771
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|71763142|gb|DR961079.1|DR961079
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|18166312|gb|BM336151.1|BM336151
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|13237142|gb|BG355156.1|BG355156
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: CAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|110221084|gb|EC902982.1|EC902982
genomic: CAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: GGGCAGGGAGGCAATAAATTTTCCTTTTCTTCAGGGCCTAATGCAAAAG CCAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|94475013|gb|EB703971.1|EB703971
genomic: GGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCTTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|71431017|gb|DR812067.1|DR812067
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTGEST: gi|71333251|gb|DR803680.1|DR803680
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
EST: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
genomic: AGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcc ... gtgtgctcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATCCGTTACACACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGTAAGAATATATTCTTGTTGAAGTCACTAGATGATCTGTTTCAGAAGGGCAGGGAGGCAATAAATTATCCTGCTCTTCAGGACCTAATGCAAAAGgtatgttgcctatttttccattggttttatacttttatttttgatttgagaaactgatttaggtcctgtttggaagaaacccagtttttaagaaacccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaacc