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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTATCAGATGAAGATTAGTGCACTGTGGGAGGAAGGTGGCAACAGAACACCGGCTTCGCCTGCCAGGGTCGTGCAATATGAAGgtgtgcatggtgcatctctcttggtactgaatagcatgatttgatcttctggtcccatatccatcattttcaagatgtgcttgcattggaagggaatgtt...

Basic information

species Zea mays
transcript GRMZM2G039505_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039505_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 5'ss of exon 2
ATGGTATCAGATGAAGATTAGTGCACTGTGGGAGGAAGGTGGCAACAGAACACCGGCTTCGCCTGCCAGGGTCGTGCAATATGAAGgtgtgcatggtgcatctctcttggtactgaatagcatgatttgatcttctggtcccatatccatcat--tttcaagatgtgcttgcattggaagggaatgtt----
 ||||| || |||||||||||||||  |||||||||||||||   ||  || || ||||| ||||| |||||||||||||||||||||| |     | ||||  |  || |  ||||||  | |  || ||| |||  | | |   |  ||||  ||||||||||   |||   |||||  | ||| |    
GTGGTACCAAATGAAGATTAGTGCAACGTGGGAGGAAGGTGGTTCCAAGACGCCAGCTTCACCTGCAAGGGTCGTGCAATATGAAGgtgcg-----tccatcatttctgatgttgaatatgaaggcttcatcatctacttctactactttcatgatttcaagatgc-tttgtgatggaaatgtatggtgaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9742810|gb|BE518958.1|BE518958
EST:     AGGTGGCAACAGAACACCGGCTTCGCCTGCCAGGGTCGTGCAATATGAAG                         CTTCTGATGTTGGTGGAGACGATGCATTAGGCATTTGGAAAATAGATGATA
genomic: AGGTGGCAACAGAACACCGGCTTCGCCTGCCAGGGTCGTGCAATATGAAGgtgtgcatgg ... gattgtgcagCTTCTGATGTTGGTGGAGACGATGCATTAGGCATTTGGAAAATAGATGATA