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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTCCTGCTTCTCTACCTGCCGTACAAGAGATACGTGCTGAAGAAGGATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAGgtattggtaggtacacctgttgtgtttgagtcatgattcgttggttgtgctggagttctcacttctcagattaacgctgaatgggtgtgaaattttcgcag

Basic information

species Zea mays
transcript GRMZM2G039445_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039445_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g42730.1 (Oryza sativa), 5'ss of exon 2
GCTGCTCCTGCTTCTCTACCTGCCGTACAAGAGATACGTGCTGAAGAAGGATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAGgtattggtaggtacacctgttgtgtttgagtcatgattcgttggttgtgctggagttctcacttctcagattaacgctgaatgggtgtgaaat--tttcgcag
 |||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | |||||| |||||| ||| || |||| |||||||||||||||||||  | ||   |  ||            ||  || || | |  |  |    | |  || | || |||  | |  |||||||| |||  |  |  ||| ||||
CCTGCTCATGCTTCTCTACCTGCCGTACAAAAGATATGTGCTGAAGAAGGATATCTTTTCCCGCAAACTCTATGTTACTGAGAATAAGATAGTGTACAAGgtagggttaaccatgcc------------gtattggtttgcttatcttcgctgcgagcttaattgtcatttcagtgctgaatgcgtgcaatttcattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338303|gb|DN205276.1|DN205276
EST:     ATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAG                         GTATTGGCGACTAGGCCTTCGTACATGCCATTCATGGGGATAGTTAAGAAA
genomic: ATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAGgtattggtag ... attttcgcagG------CGACTAGGCCTTCGTACATGCCATTCATGGGGATAGTTAAGAAA
EST: gi|94473182|gb|EB702140.1|EB702140
EST:     ATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAG                         GCGACTAGGCCTTCGTACATGCCATTCATGGGGATAGTTAAGAAAGAGATT
genomic: ATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAGgtattggtag ... attttcgcagGCGACTAGGCCTTCGTACATGCCATTCATGGGGATAGTTAAGAAAGAGATT
EST: gi|78079374|gb|DV507786.1|DV507786
EST:     ATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAG                         GTATTGGCGACTAGGCCTTCGTACATGCCATTCATGGGGATAGTTAAGAAA
genomic: ATATCCTATCCCGCCAACTCTTTGTCACCGAGAGTAAGATAGTGTACAAGgtattggtag ... attttcgcagG------CGACTAGGCCTTCGTACATGCCATTCATGGGGATAGTTAAGAAA