1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGATGTTACACACAGGGTGCCAATAATAGTTACTGGAAATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGgtatgttgtcctatctggagcagttctgtacaatgatgtagcaccaactgaaacttttggactggagtattttgctttagccttgtgtataattaggtgt...
species | Zea mays |
transcript | GRMZM2G039345_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTCTATATGCACCTTTAATTCGTGATGGGAGAATGGAAAAATTTTACTG GCAGCCCACCCGTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAAEST: gi|149110162|gb|EE293978.2|EE293978
genomic: ACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGgtatgttgtc ... ctttgaacagGCAGCCCAACCGTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAA
EST: ACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTG GCAGCCCACCCGTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAAEST: gi|50324671|gb|CO519797.1|CO519797
genomic: ACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGgtatgttgtc ... ctttgaacagGCAGCCCAACCGTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAA
EST: ACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTG GCAGCCCAACCGTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAA
genomic: ACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGgtatgttgtc ... ctttgaacagGCAGCCCAACCGTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATGTTACACACAGGGTGCCAATAATAGTTACTGGAAATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGgtatgttgtcctatctggagcagttctgtacaatgatgtagcaccaactgaaacttttggactggagtattttgctttagccttgtgtataattaggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA