Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6827758|gb|AW331401.1|AW331401EST: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAG GGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
genomic: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAGgtgcacatta ... gtggctccagGGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
EST:
gi|6166674|gb|AW144938.1|AW144938EST: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAG GGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
genomic: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAGgtgcacatta ... gtggctccagGGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
EST:
gi|211290443|gb|FL055535.1|FL055535EST: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAG GGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
genomic: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAGgtgcacatta ... gtggctccagGGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
EST:
gi|211048568|gb|FL405946.1|FL405946EST: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAG GGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
genomic: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAGgtgcacatta ... gtggctccagGGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
EST:
gi|211455510|gb|FL460036.1|FL460036EST: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAG GGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
genomic: TTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAGgtgcacatta ... gtggctccagGGAAACTGCCAGTGCAGAGAAGGTCAAAGAAGCACACAAGAGAGTGATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGGCCCGGCCCGTAGTTCCAAGGATGCGCAAATTCTATGAAGGTGGTTTCCAACCTACGATGACACGAAGGGAAGCTGCTTTAATCCTTGGTGTCAGgtgcacattacataatatctgtaccactgtcaatcatttttttgtgtttctctttcctttcaatatcctgttctctagcaccatttaagtttattctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT