Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaactttgcgttttctttcccaatagtaagattctgtgttgtatatgaactatgaagtgctcatgaaattcagaaaatggtaccctgctttag

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878697|gb|EB408654.1|EB408654
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|211345290|gb|FL126063.1|FL126063
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|211345286|gb|FL126059.1|FL126059
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|211345287|gb|FL126060.1|FL126060
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|211345285|gb|FL126058.1|FL126058
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|30705270|gb|CD058727.1|CD058727
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|101390742|gb|EB817305.1|EB817305
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCGAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|71448245|gb|DR829295.1|DR829295
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|211345293|gb|FL126066.1|FL126066
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAANCCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|148946555|gb|EC884293.2|EC884293
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|211345288|gb|FL126061.1|FL126061
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
EST: gi|148942779|gb|EC887806.2|EC887806
EST:     GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG                         GTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC
genomic: GATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaac ... cctgctttagGTTGGATCCCTGCCCCTCCGTGCAAGGGGATCCATTTTTTCTTCACCACGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAGgtgaattaactttgcgttttctttcccaatagtaagattctgtgttgtatatgaactatgaagtgctcatgaaattcagaaaatggtaccctgctttag

- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA