Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcag

Basic information

species Zea mays
transcript GRMZM2G038606_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038606_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 2
CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcag
||||| ||||||||||||||||||||||||||||| |||||||||||      | |  |||  |     |    | ||| || ||| || | || || || || | ||   |||  ||| |     ||  |||  | |    | ||  |       
CTTCCGCTCTCGCTCCTCAAGACCGCCCAGGGGCATCCCATGgtaagag----aagatccgccgcttcgcgctgtgcgtggtggttgtttg-gtttggtt-tctgatcgg-ctagggtttga---aacttttgtgtggtttttttttag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211074698|gb|FL076203.1|FL076203
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533726|gb|FL071650.1|FL071650
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCC-ATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536731|gb|FL071660.1|FL071660
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533729|gb|FL071653.1|FL071653
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077444|gb|FL076220.1|FL076220
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077445|gb|FL076221.1|FL076221
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077443|gb|FL076219.1|FL076219
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|78107776|gb|DV526194.1|DV526194
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077441|gb|FL076217.1|FL076217
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536732|gb|FL071661.1|FL071661
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|94474355|gb|EB703313.1|EB703313
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCCGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533731|gb|FL071655.1|FL071655
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|32868742|gb|CF008424.1|CF008424
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074699|gb|FL076204.1|FL076204
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGACATCTGGTCAATTG
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGG-CATCTGGTCAATTG
EST: gi|211074704|gb|FL076209.1|FL076209
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074701|gb|FL076206.1|FL076206
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|31358015|gb|CD442372.1|CD442372
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533734|gb|FL071658.1|FL071658
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533732|gb|FL071656.1|FL071656
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|5343007|gb|AI795312.1|AI795312
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|89252869|gb|DY624655.1|DY624655
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCCGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077437|gb|FL076213.1|FL076213
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|32804245|gb|CD956481.1|CD956481
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|84970052|gb|DW468427.1|DW468427
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGGTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077438|gb|FL076214.1|FL076214
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077436|gb|FL076212.1|FL076212
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533730|gb|FL071654.1|FL071654
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074703|gb|FL076208.1|FL076208
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536733|gb|FL071662.1|FL071662
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533727|gb|FL071651.1|FL071651
EST:     CTTCCCCTCTCGCTCCTCAAAACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAAC-GCCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074702|gb|FL076207.1|FL076207
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|78115516|gb|DV533904.1|DV533904
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533728|gb|FL071652.1|FL071652
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536730|gb|FL071659.1|FL071659
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211533733|gb|FL071657.1|FL071657
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGSCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077434|gb|FL076210.1|FL076210
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|32827249|gb|CD966927.1|CD966927
EST:     ACAATATGCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: ACAATATGCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211074700|gb|FL076205.1|FL076205
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|9952507|gb|BE639090.1|BE639090
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGATACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211077442|gb|FL076218.1|FL076218
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|78115517|gb|DV533905.1|DV533905
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|211536735|gb|FL071664.1|FL071664
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
EST: gi|76927712|gb|DV171333.1|DV171333
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATTTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgt ... gtgatctcagCTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATGgtaaggacgtaaggtcccgttggccttcttctttcgtcgtcgtttttggcgtctgattctccgttcaatctattgttagtcctgaccgttgaattgaaactattgtgatctcag

- - - - - - CTCCTC