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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctccatatccgttcttttaatacgcgccgtgtggtcagatctacgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg...

Basic information

species Zea mays
transcript GRMZM2G038356_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g23620.1 (Oryza sativa), 5'ss of exon 2
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctccatatccgttcttttaatacgcgcc---gtgtggtcagatctacgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||  || |||    | | |   || | |   ||   |  || | |  | | |     |      |  |   |    |        | ||| |    | |   
GACGTCGGAGGAGCTCAGCATCGGGAAGATCAAGTTCAAGGCCTTCGATCTCGGCGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgtctcgcgccaatctcttccaactattccattccattgcatgtttatgtttgcattcggtctctcagatctagtttgttgacggtgataactttctggct---

upper sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S7_338V6.1 (Physcomitrella patens), 5'ss of exon 2
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcga-gctccatatccgttcttttaatacgcgccgtgtggtcagatctacgccttgcgcgctat-gttgtgcccttgattcaaaacaacgtgtgtgttttg
 || ||||||||| | ||||| || || || |||||||| || || ||||| || || |||||||||||  | || ||||||||||||||||| || |||||     ||||   |  |  || ||  ||        ||   |||    | |   ||  || | | |||  |||| | ||  | |     |  | |  ||  
TACATCGGAGGAGTTGAGCATTGGAAAAATTAAGTTCAAAGCGTTTGACCTGGGTGGTCACCAGATCGCCAGACGAGTGTGGAAGGATTACTATGCCAAGgttaccactccccttttggactctt--tattttgtaagttagcagtgtgatggagtggacggtcttgttcggcccctcatgtacagaggtggatattattat

upper sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ35155 (Selaginella moellendorffii), 5'ss of exon 2
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctc-catatccg--ttcttttaatac--gcgccgtgtggtcagatctacgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg------------------------------------------------------------------------------------------------
 || || |||||||| ||||||  ||||||||| |||||||||||||| || || || |||||||||||||| |||||||||||||| ||||| || |||||    | | ||| |  |  ||||||  |  |    ||  ||   |   | | | || |||       |  | |    ||  ||   |     | || ||  | |                                                                                                
AACATCCGAGGAGCTAAGCATCAACAAGATCAAATTCAAGGCCTTCGATCTGGGGGGTCACCAGATCGCGCGACGCGTGTGGAAGGACTACTATGCCAAGgtttgacactcatctgagaattctttcgaatccaatgctttgcctttgaagcgatgctttggcaaaagttctttttgttttcttgccagtggtg-gtttgactggacgacttgttctagatctagttgctaacgatgttttgtcacaaactcgtcagatgatctgactggattccatggcttgtttactttgatcatccag

upper sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 2
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctccatatccgttcttttaatacgcgccgtgtggtcagatctacgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg
||| ||||||||||| ||||||||||||||||||||||| || || ||  | || || ||||||||||| || ||||| |||||||| |||||||| |||||   |    | |||   | | ||  |  | |     |    ||  |||    || | |  | | || |       || |||                  
GACCTCGGAGGAGCTGAGCATCGGCAAGATCAAGTTCAAAGCGTTTGATTTGGGAGGTCACCAGATCGCTCGTCGCGTCTGGAAGGACTACTACGCCAAGgttt-gtgggaaatcttctgtgttcttgggtgaaaacta--tagcactaattgtttctctttttttttttttggctatacaag-----------------

upper sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 2
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctccatatccgttcttttaatacgcgccgtgtggtcagatctacgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg
||| ||||||||||| ||||| ||||||||||||||||| || || || || ||||| ||||||||||| || ||||| |||||||| |||||||| |||||   |    | |     || |||  |    |   |  ||| | | |||        || |||  || |  |  |  ||     | |     |       
GACCTCGGAGGAGCTGAGCATAGGCAAGATCAAGTTCAAAGCGTTTGATCTGGGCGGTCACCAGATCGCTCGTCGCGTCTGGAAGGACTACTACGCCAAGgttt-gtgggaaagattctcctttcttctttgtttttgggtgaaaactata------gcactaatttttctctcttttttttggctatacaag-------

upper sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ24104 (Selaginella moellendorffii), 5'ss of exon 2
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctc-catatccg--ttctttta-atacgcgccgtgtggtcagatcta--cgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg
 || || |||||||| ||||||  ||||||||| |||||||||||||| || || || |||||||||||||| |||||||||||||| ||||| || ||||| |  | | ||| |  |  ||||||||  |    ||| ||   |   |   |  | ||||||  |    |||      |   |   |   || |   ||      
AACATCCGAGGAGCTAAGCATCAACAAGATCAAATTCAAGGCCTTCGATCTGGGGGGTCACCAGATCGCGCGACGCGTGTGGAAGGACTACTATGCCAAGgttggacactcatctgagaattcttttatgtgtttgccttggttttctactcaaactccttgcttgaatcgttacttgttctttcttatcaaatgctcgt------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18181179|gb|BM382389.1|BM382389
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211298231|gb|FL360510.1|FL360510
EST:     TCGGCGGCCACCAGATCGCGCGCCGC-TGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATAT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATAT
EST: gi|211430402|gb|FL348341.1|FL348341
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211019119|gb|FL360752.1|FL360752
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211112436|gb|FL338797.1|FL338797
EST:     TCGGCGGCCACCAGATCGCGCGCCGC-TGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGAT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGAT
EST: gi|71323617|gb|DR798487.1|DR798487
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|78087929|gb|DV516322.1|DV516322
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211304609|gb|FL362626.1|FL362626
EST:     CGGCGGCCACCAGATCGCGCGCCGS-TGTTKGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: CGGCGGCCACCAGATCGCGCGCCGCGTGTG-GAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|37420296|gb|CF647838.1|CF647838
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|76011887|gb|DT939057.1|DT939057
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|71757696|gb|DR955633.1|DR955633
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211208670|gb|FL354187.1|FL354187
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|13389140|gb|BG462572.1|BG462572
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|15209079|gb|BI430963.1|BI430963
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211137367|gb|FL362117.1|FL362117
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTA
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTA
EST: gi|50323803|gb|CO518929.1|CO518929
EST:     CAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: CAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|21626456|gb|BQ621377.1|BQ621377
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|89761899|gb|DY689728.1|DY689728
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGGATATGATAAGGAGCGA
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGA
EST: gi|22546231|gb|BU098542.1|BU098542
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|71323616|gb|DR798486.1|DR798486
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211016426|gb|FL365145.1|FL365145
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|21891770|gb|BQ744983.1|BQ744983
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211225008|gb|FL349034.1|FL349034
EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211468054|gb|FL348806.1|FL348806
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211138799|gb|FL308452.1|FL308452
EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATTATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211088468|gb|FL317120.1|FL317120
EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATAC-TGGGTAGATGCATATGATAAGGAGCGATTTGC
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGG-TAGATGCATATGATAAGGAGCGATTTGC
EST: gi|50323804|gb|CO518930.1|CO518930
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|76283564|gb|DV023132.1|DV023132
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211127050|gb|FL354964.1|FL354964
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|60354065|gb|DN221038.1|DN221038
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|26557973|gb|CA830208.1|CA830208
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|149081518|gb|EE170654.2|EE170654
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|211472806|gb|FL336887.1|FL336887
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATA
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATA
EST: gi|89250040|gb|DY621826.1|DY621826
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|9952921|gb|BE639504.1|BE639504
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|21331837|gb|BQ487218.1|BQ487218
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|76011886|gb|DT939056.1|DT939056
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|71757697|gb|DR955634.1|DR955634
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|21891755|gb|BQ744968.1|BQ744968
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|101383796|gb|EB813953.1|EB813953
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
EST: gi|76283563|gb|DV023131.1|DV023131
EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 200

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCTGAATCAAAGAAAGAGCTCGATGCTCTCCTGTCTGATGATTCTTTGGCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 347

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCTGAATCAAAGAAAGAGCTCGATGCTCTCCTGTCTGATGATTCTTTGGCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 301

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCTGAATCAAAGAAAGAGCTCGATGCTCTCCTGTCTGATGATTCTTTGGCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 286

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctcc ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCATATGATAAGGAGCGATTTGCTGAATCAAAGAAAGAGCTCGATGCTCTCCTGTCTGATGATTCTTTGGCCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTGTGGAAGGATTACTACGCAAAGgtcgagctccatatccgttcttttaatacgcgccgtgtggtcagatctacgccttgcgcgctatgttgtgcccttgattcaaaacaacgtgtgtgttttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacaa