1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACTGGCAAGACCATGCTTGCCAAAGCAGTCGCACATCATACCACCGCTGCTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttgggacatgggagctattataatgccaatatgaattcttttggattggatataaaatgtagtgaattcataggtatggcgttgcctaggtcctg...
species | Zea mays |
transcript | GRMZM2G038126_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGTCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|31355065|gb|CD439422.1|CD439422
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|19351524|gb|BM896056.1|BM896056
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|33092922|gb|CF052916.1|CF052916
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: ACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|32835304|gb|CD974982.1|CD974982
genomic: ACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: GTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|148969597|gb|EE020436.2|EE020436
genomic: GTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTEST: gi|60398034|gb|DN230850.1|DN230850
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCT
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|32908278|gb|CF013091.1|CF013091
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|32837433|gb|CD977111.1|CD977111
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: GTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGACTAAGGAGAATGCTCCAEST: gi|31354242|gb|CD438599.1|CD438599
genomic: GTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|32835786|gb|CD975464.1|CD975464
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: GTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCAEST: gi|18964972|gb|BM661316.1|BM661316
genomic: GTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
EST: CTTTTATCAGAGTCGTTGGTTCGGAG-TTGTACAGAAGTACTTGGGCGAG GGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
genomic: CTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttggg ... tcctttgtagGGCCCTAGAATGGTGCGTGATGTGTTCCGTTTGGCTAAGGAGAATGCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGGCAAGACCATGCTTGCCAAAGCAGTCGCACATCATACCACCGCTGCTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaagttgggacatgggagctattataatgccaatatgaattcttttggattggatataaaatgtagtgaattcataggtatggcgttgcctaggtcctg
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