Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATGATCAACTTAATACTCAGTACCGTCCCAAGTCTCCAACTGTACACAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgccgaaccatattttatacggctttggcctgaccccttgttcattccgcttaacacctaatgacggaaacgtcttgtccctcccag

Basic information

species Zea mays
transcript GRMZM2G037335_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037335_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 5'ss of exon 22
CTACATGATCAACTTAATACTCAGTACCGTCCCAAGTCTCCAACTGTACACAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgccgaaccatattttatacggctttggc--ctgaccccttgttcattccgcttaacacc-taatgacggaaacgtcttgtccctcccag----------
||||||||||||||||||| ||||| | || ||||  |||||| |||| || || | |||||||||||||||||||||||| ||||||||  |||||| ||||||||| |    |  | |   ||||     | |    | |    || ||  | | || ||||       |  |  ||||    ||      |||           
CTACATGATCAACTTAATAGTCAGTGCGGTACCAACACTCCAAATGTATACTATAATGTTCCGCCTGTGTAGCCAACCTTCGTACTGGATAACCATGGGTgtaagtctactcttcttt-tacgatacaatcgtcgtaaatcatgatttattactgcagcctaaccttacgcttcctcaaaccatctggtgaaaccatcttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4681093|gb|AI629763.1|AI629763
EST:     CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCT                         CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
EST: gi|166557136|gb|EG052959.1|EG052959
EST:     CTGGATCTCCATGGCT                         CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
EST: gi|12971716|gb|BG267621.1|BG267621
EST:     CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCT                         CTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG
genomic: CAATCACGTTCCGCCTGTGTAGCCAACCTTCCTACTGGATCTCCATGGCTgtaagtctgc ... tccctcccagCTGACGGTTGCAGTAGGAATGGGACCGGTGGTGGCTTTCAGGTACTTGAAG