Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactattagtggcacacattgttttccttcggtcccagactgtaacagtgttacatcacattag

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036872_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g46450.1 (Oryza sativa), 5'ss of exon 2
GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactattagtggcacacattgttttccttcggtcccagactgtaacagtgttac-atcacattag----------------
|||||||||||||||||||||||||||||||| ||||||||| ||||| | |  |  |||   ||   | |        | | | | ||  | || || |  ||                  
GTATTTAAGAGTGGCCCTCTCTTCATATCATCCAAAGgtaaa-ctatttgggttatgcatcagttatttccacctgtgca-tatcagagcatcaccattaattttcagctatgatttttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89247360|gb|DY619146.1|DY619146
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508932|gb|FL160996.1|FL160996
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|149074588|gb|EE162991.2|EE162991
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508931|gb|FL160995.1|FL160995
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508933|gb|FL160997.1|FL160997
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508930|gb|FL160994.1|FL160994
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT