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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGAATCTCATGGGGGTGGTGTTGGTTGTGTTATCAGTGGTTGTCCACCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttatttatttcaaatttcatcattttcaagttgcaaagctggctcaatatatggttttaagatgatattcccttcagctaacaatttttttttg...

Basic information

species Zea mays
transcript GRMZM2G036861_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036861_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g14990.1 (Oryza sativa), 5'ss of exon 2
ATGGTGAATCTCATGGGGGTGGTGTTGGTTGTGTTATCAGTGGTTGTCCACCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttatttatttcaaatttcatcattttcaagttgcaaagctggctc------aatatatggttttaagatgatattcccttcagc---taacaatttttttttg-----------------------------------------------------
|||| || |||||||| || ||||||||||| || |||||||| || ||||| ||||| ||||| ||||| |||||  | ||||| |||||||| || ||||    || | | ||  ||| | ||| ||||    | || | ||||||||       || | | | || |   |    | |||    | |   |  ||   | |  |||                                                     
ATGGAGAGTCTCATGGAGGCGGTGTTGGTTGCGTAATCAGTGGATGCCCACCCAGAATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGgt----ttgtctcttgaaaaatccattatttctgtgctg-acagctggcttctgtcaaaaacaggattatgcaaatgcaatcctgctaacctcttgcagaatatgattgttatgttacattacaccataatgttaactgacataaaattttgattatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106359|gb|FL258168.1|FL258168
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|148952455|gb|EC898280.2|EC898280
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106356|gb|FL258165.1|FL258165
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGTCAGAGCAGAATAAC
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAAC
EST: gi|148950436|gb|EC896004.2|EC896004
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|71442819|gb|DR823869.1|DR823869
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATACCCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149088416|gb|EE177517.2|EE177517
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149096924|gb|EE182722.2|EE182722
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106357|gb|FL258166.1|FL258166
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149088025|gb|EE177228.2|EE177228
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149089246|gb|EE178450.2|EE178450
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149106625|gb|EE188518.2|EE188518
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|148950790|gb|EC896395.2|EC896395
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|148951094|gb|EC896759.2|EC896759
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149111173|gb|EE294669.2|EE294669
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106358|gb|FL258167.1|FL258167
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149084565|gb|EE174034.2|EE174034
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|76281790|gb|DV021358.1|DV021358
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149067437|gb|EE287007.2|EE287007
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|148936477|gb|EC880584.2|EC880584
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149098825|gb|EE184838.2|EE184838
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106354|gb|FL258163.1|FL258163
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|76934911|gb|DV174083.1|DV174083
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106355|gb|FL258164.1|FL258164
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGTCAGAGCAGAATAACCTCCACAAGAAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106349|gb|FL258158.1|FL258158
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|148957149|gb|EC903140.2|EC903140
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106350|gb|FL258159.1|FL258159
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149071022|gb|EE159425.2|EE159425
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|211106353|gb|FL258162.1|FL258162
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
EST: gi|149036977|gb|EE155215.2|EE155215
EST:     CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAG                         ACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG
genomic: CCTAGAATTCCACTCACTGAGGCAGACCTACAAGTTGAACTCGATCGAAGgtgcacttat ... gattacatagACGGCCCGGACAGAGCAGAATAACCTCCACAAGGAAGGAGACTGATACATG