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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGGCGAGGCGGACTGTGGCTACTACCTCCGCACGGGCGCCTGCGGCTTCGGGGAGCGTTGCCGCTACAACCATCCCCGCGATCGTGGCGGCACTGAGgtgcgcgcgggcggacgattttctccagcctctgcttcccgctctcttgctttctcaatcttccccgatctgatccgtgtccgcgtccgacacgctgctg...

Basic information

species Zea mays
transcript GRMZM2G036837_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036837_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15460.2 (Oryza sativa), 5'ss of exon 2
GCCTGGCGAGGCGGACTGTGGCTACTACCTCCGCACGGGCGCCTGCGGCTTCGGGGAGCGTTGCCGCTACAACCATCCCCGCGATCGTGGCGGCACTGAGgtgcgcg--cgggcggacgattttctccagcctctgcttcccgctctcttgctttctcaatcttccccgatctgatccgtgtccgcgtccgacacgctgctg
||| || |||| |||||||| ||||||||||||||| ||||| ||||||||||| || || |||||||||||||| || |||||||| ||||||||||||||| |    |       || ||  || |    |||| |||       |||||   | |   | | |  |   |||  |   ||   |   ||     |    
GCCCGGGGAGGAGGACTGTGTCTACTACCTCCGCACCGGCGCGTGCGGCTTCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcctaattcgcgcttcccttcccgatctggttcgttgcggcttgcgcgcgcgcgcgtgcgtgga-tgaggcagctctagggtggatggattaac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37422569|gb|CF648997.1|CF648997
EST:     TCGGGGAGCGTTGCCGCTACAACCATCCCCGCGATCGTGGCGGCACTGAG                         TTTGGTGGAGGTGCCAACAATGGCGCAGCACAAGACTTTCCAGAACGACAG
genomic: TCGGGGAGCGTTGCCGCTACAACCATCCCCGCGATCGTGGCGGCACTGAGgtgcgcgcgg ... aaaattttagTTTGGTGGAGGTGCCAAGAATGGCGCAGCACAAGACTTTCCAGAACGACAG