Sequence
atgc intronic sequence ATGC exonic sequenceGGATATGTGGTCCTAAATAGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagttccgaatgatctgtgttttttattttgtcatatactttctttttagttgcaggttttaagcatccacccaaacctcgtgatttagcctacagga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 5'ss of exon 2
GGATATGTGGTCCTAAATAGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagttccgaatgatctgtgttttttattttgtcatatactttctttttagttgcaggttttaagcatccaccca-aacctcgtgatttagcctacagga----
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GGCTATGTCGTACTAAATAGGCCCTGGGCATTTGTACAGTGGCTGGAGAAAGCAAAGATTGAAGAAGAgtgagttaaaatttatctgc-catttcgttgagt----tactttatttgtggttttgacatttaaccttactctgatggacacttggacgcatatctagaatccc
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G03930.1 (Glycine max), 5'ss of exon 2
GGATATGTGGTCCTAAATAGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagt-tccgaatgatctgtgttttttattttgtcatatactttctttttagttgcaggttttaagcatccacccaaacctcgtgatttagcctacagga
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GGTTATGTTGTCCTAAATAGACCATGGGCTTTTGTTCAGTGGCTGGAGAAAGCAGATATTGAGGAAGAgtaagtgtcttaat--tctggttttctaaaatttttatg------ctctccaataatgaaatctaagaggcagcgta--ttttatgattgg---tgcag--
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 4
GGATATGTGGTCCTAAATAGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagttccgaatgatctgtgttttttattttgtcatatactttctttttagttgcaggttttaagcatccacccaaacctcgtgatttagcctacagga
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GGTTATATTGTCCTAAATAGACCATGGGCTTTTGTTCAGTGGCTGGAGAAAGCAGATATTGAGGAAGAgtaagtgtc---ttaattctgcttttc----tacaatttttatgctctccaacaatgaaatctaagaggcagcaca--ttttatgattgg---tgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32795199|gb|CD947435.1|CD947435EST: AGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGA GTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAA
genomic: AGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagttccg ... aaaatggcagGTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATATGTGGTCCTAAATAGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagttccgaatgatctgtgttttttattttgtcatatactttctttttagttgcaggttttaagcatccacccaaacctcgtgatttagcctacagga
- - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG