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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAACTTCTCTGTCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcag

Basic information

species Zea mays
transcript GRMZM2G035150_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035150_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G32220.1 (Glycine max), 5'ss of exon 3
---CGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAACTTCTCTGTCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtactactattact--agtcactttgcttcctcatgcc-ttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcag
     |    ||   |         |   | ||  |   |||| | |  |||    ||||||||||||| ||||||||||| ||| | ||||||||  ||||||| |||  |||  ||| |  || |||||   ||  |  |    | | ||||      || ||||||   ||||    |   |    |  |  |  |  ||| |                          
TGTTATTAGTGATGACTTCTGGGATTCATTGGAAATATCGGATGAATCTTCT---CTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtg-tacctttagtgcagccacttgattttgttttaaagtcatcatgt--ttcacctttactataattttttattgtattagttgccatttg-atttgtg-------------------------