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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAAGCGTCCGGGCCAACCTCTGCCGCTGACAATCAACAACATTCTGCTGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgccccttctatccatattccaaaacagcatccatccatcctttggctgtattattattgtcaagtgttacacacacctcctttag

Basic information

species Zea mays
transcript GRMZM2G035150_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092884|gb|DV521258.1|DV521258
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|50324082|gb|CO519208.1|CO519208
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|71427954|gb|DR809004.1|DR809004
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|50331812|gb|CO526938.1|CO526938
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|211425221|gb|FL005414.1|FL005414
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAAGAACCTTTTCAGC-CCTTGCTCAAG
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTT-CAGCACCT-GCTCAAG
EST: gi|74235679|gb|DT643593.1|DT643593
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|71449152|gb|DR830202.1|DR830202
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|211013811|gb|FL029072.1|FL029072
EST:     GTTCTCACGCAGCAATGGCTTCGCCCACGCCGCCCTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGACCCTTTCAGCACCTGCTCAAGCC
genomic: GTTCTCACGCAGCAATGGCTTCGCCCACGC-GCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|87156327|gb|DY401116.1|DY401116
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|71427181|gb|DR808231.1|DR808231
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         ------A-G-G-CAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|76291810|gb|DV031378.1|DV031378
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|50327717|gb|CO522843.1|CO522843
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|31628099|gb|CD526441.1|CD526441
EST:     TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGNC
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCC
EST: gi|211442451|gb|FL216162.1|FL216162
EST:     GTTCTCACGCAGCAATGGCTTCGCCCACGCGCCCGT-CATGTAGAACCAG                         CTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCA
genomic: GTTCTCACGCAGCAATGGCTTCGCCCACGCGCC-GTGCATGTAGAACCAGgtatgcccct ... cctcctttagCTTCTCAAGAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCA