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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGACAACATTATTGGTGAGGGTGGATACGGTGTAGTTTATCGCGGGCAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttccttatctaatctcagctcgttatttacctgcttgtcttccttaccaatgttgcatttagtttctccaattgatgttttgtgaatctgtag

Basic information

species Zea mays
transcript GRMZM2G034855_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034855_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g21960.1 (Oryza sativa), 5'ss of exon 2
CAAAGGACAACATTATTGGTGAGGGTGGATACGGTGTAGTTTATCGCGGGCAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttccttatctaatctcagctcg------ttatttac-ctgcttgtct-tccttaccaatgttgca------------tttagtttctccaattgatgttttgtgaatctgtag
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CAAAGGATAACATTCTTGGTGAGGGTGGATATGGTGTAGTTTATCGTGGCCAACTGATCAATGGCACTCCTGTTGCTGTTAAGAAGCTTCTCAATAACCTgtaagtcttgccctgcttatcagagtttgatctttttgtttattctccttgtctcttgtctccaataccacaaatcagacagctttaagtttttccaatcgatgttttgtaaacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87157535|gb|DY402324.1|DY402324
EST:     CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCT                         AGGTCAAGCTGAGAAGGAATTTAGAGTAGAAGTTGAGGCTATTGGTCATGT
genomic: CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttc ... gaatctgtagAGGTCAAGCTGAGAAGGAATTTAGAGTAGAAGTTGAGGCTATTGGTCATGT
EST: gi|71416639|gb|DR803774.1|DR803774
EST:     CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCT                         ANGTCAAGCTGAGAAGGAAT
genomic: CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttc ... gaatctgtagAGGTCAAGCTGAGAAGGAAT
EST: gi|91052743|gb|EB163161.1|EB163161
EST:     CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCT                         AGGTCAAGCTGAAAAGGAAT
genomic: CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttc ... gaatctgtagAGGTCAAGCTGAGAAGGAAT
EST: gi|22819564|gb|BU499654.1|BU499654
EST:     CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCT                         AGGTCAAGCTGAGAAGGAAT
genomic: CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttc ... gaatctgtagAGGTCAAGCTGAGAAGGAAT
EST: gi|26559774|gb|CA832009.1|CA832009
EST:     CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCT                         AGGTCAAGCTGAGAAGGAATTTAGAGTA
genomic: CAGCTAATCAATGGCTCCCCTGTTGCTGTCAAAAAGCTTCTCAATAACCTgtaagccttc ... gaatctgtagAGGTCAAGCTGAGAAGGAATTTAGAGTA