Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGTGCTAATATCTCCATGTATGTGCAAGGGGACACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAGgtaacacctgtatgtgttatgtgcgtacattcttttctcggaacttgcttttcttattgcgccttatgtcaaatttaagttcccaagcataggaccagga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G034536_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g42500.1 (Oryza sativa), 5'ss of exon 2
GTGATGTGCTAATATCTCCATGTATGTGCAAGGGGACACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAGgtaacacctgtatgtgttatgtgcgtacattcttttctcggaacttgc---ttttcttattgcgccttat--gtcaaatttaagttcccaagcataggaccagga
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GTGATGAGCTGATTTCTCCTTGTATGTGCAAAGGGACGCAGCAGTTCGTGCATCGCTACTGCCTTGATCATTGGAGGTCTGTTAAGgtaaagtgccagt-tgcta-gtacctacattcccaacattggatttacgaatttccggaaaaagctctgctagtctgtcctagtgtcgcctctgctgttgta---
upper sequence: GRMZM2G034536_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ14522 (Selaginella moellendorffii), 5'ss of exon 2
GTGATGTGCTAATATCTCCATGTATGTGCAAGGGGACACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAGgtaacacctgtatgtgttatgtgcgtacattcttttctcggaacttgcttttcttattgcgccttatgtcaaatttaagttcccaagcataggaccagga
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GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactcttccta----gcacattttttccttcttaaacaccgaatgaaacagtggttttctttgtttttcgcag----------------------
upper sequence: GRMZM2G034536_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ26224 (Selaginella moellendorffii), 5'ss of exon 2
GTGATGTGCTAATATCTCCATGTATGTGCAAGGGGACACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAGgtaacacctgtatgtgttatgtgcgtacattcttttctcggaacttgcttttcttattgcgccttatgtcaaatttaagttcccaagcataggaccagga
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GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactcttccta--------gcacatttttttcttctaaaacac-----cgaatgaaacagtggttttctttgtttttcgcag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101385086|gb|EB814588.1|EB814588EST: CACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAG GAAGGAACTGCCTTTTCACACTGCACAACATGCAAGGCGCGATTCCATCTA
genomic: CACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAGgtaacacctg ... atctcctcagGAAGGAACTGCCTTTTCACACTGCACAACATGCAAGGCGCGATTCCATCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGTGCTAATATCTCCATGTATGTGCAAGGGGACACAGCAGTTCGTGCATCGCTCCTGCCTTGACCACTGGAGGTCTGTTAAGgtaacacctgtatgtgttatgtgcgtacattcttttctcggaacttgcttttcttattgcgccttatgtcaaatttaagttcccaagcataggaccagga
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