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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTCTGGACGGTCCCAACGTCCAGTTTTCCGCCTCCTCCGAGGAAGAACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatatatacttgattggttgatgccatggactctctccctatctttctgcgcctagcctaatgacaattcagtaggatgtatgccaattgatgagtatagcgtagatcgatgttggccctgaatgcagcatgccctaatgtggtattgggtacag

Basic information

species Zea mays
transcript GRMZM2G034143_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211489871|gb|FL134685.1|FL134685
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|60344955|gb|DN211928.1|DN211928
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211492747|gb|FL134690.1|FL134690
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211489870|gb|FL134684.1|FL134684
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211489869|gb|FL134683.1|FL134683
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211492748|gb|FL134691.1|FL134691
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211489866|gb|FL134680.1|FL134680
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211492749|gb|FL134692.1|FL134692
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211492744|gb|FL134687.1|FL134687
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: gi|211492751|gb|FL134694.1|FL134694
EST:     ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG                         GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCGTCTGGACGGTCCCAACGTCCAGTTTTCCGCCTCCTCCGAGGAAGAACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatatatacttgattggttgatgccatggactctctccctatctttctgcgcctagcctaatgacaattcagtaggatgtatgccaattgatgagtatagcgtagatcgatgttggccctgaatgcagcatgccctaatgtggtattgggtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA