Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149073651|gb|EE161956.2|EE161956EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTTTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|4775863|gb|AI664868.1|AI664868EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|32846893|gb|CD986574.1|CD986574EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|60397341|gb|DN230157.1|DN230157EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|149001025|gb|EE038273.2|EE038273EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|31353749|gb|CD438106.1|CD438106EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|88758374|gb|DY542743.1|DY542743EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|67033415|gb|CO462164.1|CO462164EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|161586901|gb|EY954813.1|EY954813EST: CGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAG
genomic: CGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATG-AGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAG
EST:
gi|194717163|gb|FK934316.1|FK934316EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|32850478|gb|CD990159.1|CD990159EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|89251703|gb|DY623489.1|DY623489EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|149005072|gb|EE039600.2|EE039600EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|148930579|gb|EE285231.2|EE285231EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|148969137|gb|EE019875.2|EE019875EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|108953386|gb|EC364715.1|EC364715EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|6021300|gb|AW066228.1|AW066228EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGGCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|4967157|gb|AI692075.1|AI692075EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACCCTACGCCGCAAGGGATTCTATCCCGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|18384118|gb|BM417318.1|BM417318EST: ACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: ACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|19057883|gb|BM736550.1|BM736550EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG G
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcag-
EST:
gi|19057883|gb|BM736550.1|BM736550EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG G
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcag-
EST:
gi|22489092|gb|BU049015.1|BU049015EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGAAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|211049937|gb|FL115772.1|FL115772EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|71769825|gb|DR967762.1|DR967762EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|74236102|gb|DT644016.1|DT644016EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTTTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|149012209|gb|EE042506.2|EE042506EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTTTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|6022009|gb|AW066937.1|AW066937EST: GACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: GACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|91048341|gb|EB158759.1|EB158759EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|5005964|gb|AI712026.1|AI712026EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAGGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|31355932|gb|CD440289.1|CD440289EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|12970895|gb|BG267212.1|BG267212EST: TCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: TCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|76924384|gb|DV169927.1|DV169927EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|4886205|gb|AI677325.1|AI677325EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
EST:
gi|19058193|gb|BM736860.1|BM736860EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGC
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGC
EST:
gi|60343524|gb|DN210497.1|DN210497EST: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTG ATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
genomic: CAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
97GAGAGGGCAAGGAGAGGTGAAGGGCCAACCCTAGTCGAGTGTGAAACATACAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGTACATCATAGAGCAGAACCTCGCAACCGAATCCGAGCTGAAGAGCATCGA
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
87GAGAGGGCAAGGAGAGGTGAAGGGCCAACCCTAGTCGAGTGTGAAACATACAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGTACATCATAGAGCAGAACCTCGCAACCGAATCCGAGCTGAAGAGCATCGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
62GAGAGGGCAAGGAGAGGTGAAGGGCCAACCCTAGTCGAGTGTGAAACATACAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGTACATCATAGAGCAGAACCTCGCAACCGAATCCGAGCTGAAGAGCATCGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
403GAGAGGGCAAGGAGAGGTGAAGGGCCAACCCTAGTCGAGTGTGAAACATACAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggatta ... tttcgcgcagATGAGAAAACACACTACGCCGCAAGGGATTCTATCACGGCCTTGAAGAAGTACATCATAGAGCAGAACCTCGCAACCGAATCCGAGCTGAAGAGCATCGA