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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCATCAGCTATTCTGAACTTCAGTGAAAACTGCAGACCTGATATTTTGACACCATACTTGGATGTAATAGTTGGGAAACTTCTATTGTTACTCCAGgtggatctcacatctagtctttaaaccttaactttaacagtatagacattagacataagcataatgtttattctgttattttaaacttgtatgcttatgatgtag

Basic information

species Zea mays
transcript GRMZM2G033619_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g49420.2 (Oryza sativa), 5'ss of exon 2
TGCTGCATCAGCTATTCTGAACTTCAGTGAAAACTGCAGACCTGATATTTTGACACCATACTTGGATGTAATAGTTGGGAAACTTCTATTGTTACTCCAGgtggatctcacatctagtctttaaaccttaacttta-acagtatagacattagacataagcataatgtttattctgttattttaaacttgtatgcttatgatgtag
 || || || || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| || |  || || |||||    ||  ||| |  || |  | |||| | |||   ||| ||| |||| | || |   |  ||  ||| || |||| | | | |                    
CGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGATATTTTGACACCATACTTGGATGGGATAGTTGGGAAACTACTGTCATTGCTTCAGgtaatccttgcatttgatcatggagccttcattttgtgcagcataaacatga-accttttcggaaattttgtt-tgttttctgatag-------------------

upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 5
TGCTGCATCAGCTATTCTGAACTTCAGTGAAAACTGCAGACCTGATATTTTGACACCATACTTGGATGTAATAGTTGGGAAACTTCTATTGTTACTCCAGgtggatctcacatctagtctttaaaccttaactttaacagtatagacattagacataagcataatgtttattctgttattttaaacttgtatgcttatgatgtag-----
|||||| |||||  |||| |||||||| || ||||||| ||||||||| || || |||||||||||||  |||||| | ||||| ||  |  | || |||||  || | | |   | |  ||   |   ||   |   | ||| | ||||   |  ||  ||  |  ||||||  | | || ||  ||| ||  |    |  |       
TGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGGATAGTTAGCAAACTACTTGTACTTCTTCAGgtatattt-atagagaattattct-caagaataatgttattatggtcattttgctaaattatcgtaattattccttcactt-aattttggatattctatacatttttcag

upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G12120.1 (Glycine max), 5'ss of exon 3
TGCTGCATCAGCTATTCTGAACTTCAGTGAAAACTGCAGACCTGATATTTTGACACCATACTTGGATGTAATAGTTGGGAAACTTCTATTGTTACTCCAGgtggatctcacatctagtctttaaaccttaactttaacagtatagacattagacataagcataatgt--ttattctgttattttaaacttgtatgcttatgatgtag---------
|||||| |||||  |||| |||||||| || ||||||| ||||||||| || || ||||||||||||| ||||||| | ||||| ||  |  | || |||||  || | | |     |  ||   |   ||   |   | ||| | ||||   |  ||  || || |  ||    | || ||| |      | ||  |||  | ||          
TGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGAATAGTTAGCAAACTACTTGTACTTCTTCAGgtatatttaatagagtattattct-caagaataatgttattatggtcattttgctgaattatcatatgattgaattattctttcacctaattttggatattctatacattttttag