ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatccaagttgaattcgacgtaagtgcattctagtcacctcatcctgcatccttatatttgggactaaacttgtacag

Basic information

species	Zea mays
transcript	GRMZM2G032699_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2

TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatcca-agttgaatt-cgacgtaagtgc-attctagtcacctcatcctgcatccttatatttgggactaaacttgtacag
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| ||||  | |||||  | || || |  || |     ||  |  ||      ||| ||        ||| |  || |   |  || |    ||  ||||
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctatt-cacag

upper sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2

TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatcca-agttgaatt-cgacgtaagtgc-attctagtcacctcatcctgcatccttat-atttgggactaaacttgtacag--------------------------------------------------
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| ||||  | |||||  | || || |  || |     ||  |  ||      ||| ||        ||| |  || | | |  |   |  | |   | ||                                                  
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag

upper sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g22950.2 (Oryza sativa), 5'ss of exon 2

----------------------------------------------TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatccaagttgaattcgacgtaagtgcattctagtcacctcatcctgcatccttatatttgggactaaacttgtacag
                                              |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |                                                                                                                      
GTTTGCGATGAGCTTGAGGACGTGATGGAAGAAGgtggtatactagtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacag----------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|9733393|gb|BE512250.1|BE512250

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTCG                         AGGTTACATGGGTTCCAAGCTCGCCAACAATATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|5525640|gb|AI861533.1|AI861533

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGCAG                         AGGTTACATGGGTTCCAAGCTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|37387580|gb|CF630987.1|CF630987

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTCG                         AGGTTACATGGGTTCCAAGCTCGCCAACAATATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|211226976|gb|FL456590.1|FL456590

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGAC--G--G                         AGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|6194875|gb|AW146979.1|AW146979

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGCAG                         AGGTTACATGGGTTCCAAGCTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|211450962|gb|FK989163.1|FK989163

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAG                         AGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|113615722|gb|DW781078.1|DW781078

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAG                         AGGTTACATGGGTTCCAAACTCGCCAACAACA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACA

EST: gi|6695878|gb|AW288986.1|AW288986

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGCAG                         AGGTTACATGGGTTCCAAGCTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|60341109|gb|DN208082.1|DN208082

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAG                         AGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|40335831|gb|CK369901.1|CK369901

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTCG                         AGGTTACATGGGTTCCAAGCTCGCCAACAATATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|60359354|gb|DN226327.1|DN226327

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTCG                         AGGTTACATGGGTTCCAAGCTCGCCAACAATATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|6056726|gb|AW091131.1|AW091131

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGCAG                         AGGTTNCATGGGTTCCAAGCTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

EST: gi|60358371|gb|DN225344.1|DN225344

EST:     GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGG--AG                         -G-TTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA
genomic: GTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 117

TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatc ... acttgtacagAGGTTACATGGGTTCCAAACTCGCCAACAACATAGAGTGCGAAATCTTCCAAGTGCTCCTCGAGGAGGCGAGGGAGAGCTACAGAGAGGACATCGTGATG

Block sizes: 48 (upstream exon), 28 (downstream exon)
Score: 39

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 71