1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttttggtgaactctttgtttatttgcatgttgctctaaaatgcgtccatattcaatcttatgtgttttttatttccacatccatcttgggtac...
species | Zea mays |
transcript | GRMZM2G032367_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|148953376|gb|EE152870.2|EE152870
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|6127287|gb|AW129812.1|AW129812
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|30705068|gb|CD058657.1|CD058657
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: AGGGGCATTAACCAGCTTCTGGAAGGAAAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|101393982|gb|EB818924.1|EB818924
genomic: AGGGGCATTAACCAGCTTCT-GAA-GAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|88757330|gb|DY541471.1|DY541471
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTTTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|91878167|gb|EB408124.1|EB408124
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|32907328|gb|CF012141.1|CF012141
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|91048031|gb|EB158449.1|EB158449
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|60359697|gb|DN226670.1|DN226670
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|76020657|gb|DT947827.1|DT947827
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|71327453|gb|DR800341.1|DR800341
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|71448913|gb|DR829963.1|DR829963
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|50338207|gb|CO533333.1|CO533333
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|149084255|gb|EE173682.2|EE173682
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|149110785|gb|EE190606.2|EE190606
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|37420962|gb|CF648177.1|CF648177
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCT GGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
genomic: CAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttt ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCTTGATGGCTGCCGCAAGGGGCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTgtaagtgttttggtgaactctttgtttatttgcatgttgctctaaaatgcgtccatattcaatcttatgtgttttttatttccacatccatcttgggtac
- - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGA