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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGGGTCATCTATCCGGAAAACTCTGGTTAAAGAAGCAGCTGCTTGTGGCGCAGCACATCTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGGgtacataatctcatacattgcatactagaatattgccgtctttgtccaaatacattaagttggttctgatacaagtactgccccccctcccctccgtcaacatgtag

Basic information

species Zea mays
transcript GRMZM2G032337_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032337_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g08950.1 (Oryza sativa), 5'ss of exon 3
GTGGAGGGTCATCTATCCGGAAAACTCTGGTTAAAGAAGCAGCTGCTTGTGGCGCAGCACATCTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGGgtacataatctcatacattgcatactagaatattgccgtctttgtcc-aaatacattaagttggttctgatacaagtactgccccccctcccctccgtcaacatgtag
||||||| ||||||||||||||||||||||| |||||||| ||| | |  ||||| || |||||||||||||||||  |||| ||||| |  || ||  ||||| |||| | ||      ||   |    || ||  || ||  ||| || || | |  |||   ||||||    | |||        | | | |   ||        
GTGGAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCCTACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGgtacctaat-taatttgacacacttt----tactgt-gtgttgatcctaagtataatttgtt--ctctgatgttggaactattgtt--tgctcccaaacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469754|gb|DY236124.1|DY236124
EST:     GGCGCAGCACATCTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGG                         ATCCTCCTTGACATCAGTTGCCAAGTACTGCTCAAAGAGAGTTCCAGCCAG
genomic: GGCGCAGCACATCTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGGgtacataatc ... caacatgtagATCCTCCTTGACATCAGTTGCCAAGTACTGCTCAAAGAGAGTTCCAGCCAG
EST: gi|28931384|gb|CB334745.1|CB334745
EST:     CTCATCCTTGG-GTCACGAACAATTCCCGGTCCTTCGG                         ATCCTCCTTGACATCAGTTGCCAAGTACTGCTCAAAGAGAGTTCCAGCCAG
genomic: CTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGGgtacataatc ... caacatgtagATCCTCCTTGACATCAGTTGCCAAGTACTGCTCAAAGAGAGTTCCAGCCAG
EST: gi|76909164|gb|DV163254.1|DV163254
EST:     GGCGCAGCACATCTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGG                         ATCCTCCTTGACATCAGTTGCCAAGTACTGCTCAAAGAGAGTTCCAGCCAG
genomic: GGCGCAGCACATCTCATCCTTGGTGTCACGAACAATTCCCGGTCCTTCGGgtacataatc ... caacatgtagATCCTCCTTGACATCAGTTGCCAAGTACTGCTCAAAGAGAGTTCCAGCCAG