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GTGCTCATGTGCTGTCGGGGAATGTGTTTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcatttctgtcttctgattctgaactgtgacgagtttatttacctaggggtgtttgaatgcattagagctagggccctttggcagggctctggctt...
species | Zea mays |
transcript | GRMZM2G032222_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAGEST: gi|101387425|gb|EB815728.1|EB815728
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAGEST: gi|26557240|gb|CA829475.1|CA829475
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAGEST: gi|31353544|gb|CD437901.1|CD437901
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACAAAGEST: gi|94479207|gb|EB708165.1|EB708165
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCCAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAGEST: gi|148949255|gb|EC894698.2|EC894698
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAGEST: gi|148942934|gb|EC887978.2|EC887978
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAGEST: gi|24768393|gb|CA403522.1|CA403522
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
EST: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGAT TCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACAAAG
genomic: TTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcattt ... tgtttgacagTCTCCAATCAGAGTTCCTGTTTCATCTGACAAGTTCTGGCTGTTAACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTCATGTGCTGTCGGGGAATGTGTTTGAGCCCCGAGCCTTGGACGAGCTCATTCCCAAGTGGAGGCAAGAGGATgtacgcatttctgtcttctgattctgaactgtgacgagtttatttacctaggggtgtttgaatgcattagagctagggccctttggcagggctctggctt
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT