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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAGCGGCCGTTGACCCTGTGGAACCGGAGAAGGTTCTCAAGGCGGCCGGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccatattcttccatctgtttattcgctaagttcccttctttgctagcgtttgaacgttctgagcagtggtgctgaactagggatacagatttaaa...

Basic information

species Zea mays
transcript GRMZM2G031825_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031825_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g21460.1 (Oryza sativa), 5'ss of exon 2
AGGCAGCGGCCGTTGACCCTGTGGAACCGGAGAAGGTTCTCAAGGCGGCCGGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtatac--catattcttccatct-gtttattcgc---taagttcccttctt-tgctagcgtttgaacgttctgagcagtggtgctgaactagggatacagatttaaa
 ||| |||||||| ||||| ||||| ||||||||||| ||   ||||||||  |||||||||| |  | |||||||||| ||||||||||| || |||||||   |  | || || ||| ||| ||||| |       || ||||   |   || | || ||  |  |||     |  |||     ||  || | |        || 
CGGCGGCGGCCGTCGACCCCGTGGAGCCGGAGAAGGTGCTTGCGGCGGCCGCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcctagtcctccttctagtttagttatggaaaaattccgcccaaatgttggccttccagagtttc---ctatgggatgcaatcagtgctgtg---ccaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211455844|gb|FL371246.1|FL371246
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211282892|gb|FL423639.1|FL423639
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211276907|gb|FL386582.1|FL386582
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGG-ATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAA
EST: gi|211487768|gb|FL393005.1|FL393005
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211436196|gb|FL370281.1|FL370281
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211112220|gb|FL429165.1|FL429165
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211201689|gb|FL384215.1|FL384215
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCYGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211251969|gb|FL399229.1|FL399229
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211539553|gb|FL409993.1|FL409993
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|32910784|gb|CF015596.1|CF015596
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211133046|gb|FL407432.1|FL407432
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211445202|gb|FL371167.1|FL371167
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211451679|gb|FL376124.1|FL376124
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211520775|gb|FL373480.1|FL373480
EST:     GGCGANGTCNGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGA
EST: gi|211143159|gb|FL403015.1|FL403015
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCMATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211265984|gb|FL369214.1|FL369214
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|32910981|gb|CF015793.1|CF015793
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211497290|gb|FL426479.1|FL426479
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAG
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAG
EST: gi|211231771|gb|FL389681.1|FL389681
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|32803246|gb|CD955482.1|CD955482
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211090884|gb|FL430012.1|FL430012
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211108385|gb|FL394493.1|FL394493
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211529760|gb|FL372707.1|FL372707
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: gi|211464411|gb|FL419842.1|FL419842
EST:     GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG                         GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA