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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaaagatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccag

Basic information

species Zea mays
transcript GRMZM2G031802_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031802_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g28340.1 (Oryza sativa), 5'ss of exon 4
TGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaaagatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccag
||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||| | ||| |    | | | |||  ||| ||      || ||  |    |   || || |  | |  | | | |  |||     ||   |                                                     
TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGAGCCCCATTTCGTTCATTGGATAAgtatggactccat-catcttacctttccatttctca----tggttatg----gtggatgatcttttaactgttatatatactttt-gttgcag-----------------------------------------------------

upper sequence: GRMZM2G031802_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G35390.1 (Glycine max), 5'ss of exon 4
TGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattcct--tgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaaaga-tgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccag
 || ||| | |  || || || || |||||||| ||||| ||||| || ||||| || |||||||| ||||||||||||| || ||  | | |  |  | |  |     ||   | || |||    |   | || |||  |||||  | | | |||| |    | ||||    |||                                               
-GCATACAGAGCACTATACATTCTCAACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttctcttattctgtttaatggttactattttttttgcttctacacttaaaataatt--attaactactctctgcattgttaactatgtcttgtgg----------------------------------------------

upper sequence: GRMZM2G031802_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
TGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaa-agatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccag
||| ||| | |  || || || || |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||| |  ||  |    |   || |  || ||   || |  || |   |  | | |  | | ||||  |  |   | |||||  ||||||        | ||   |||                                     
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttact---attttttttgcttctacgcttattataattattaagtaactacactctgcattat--------tcactactatg------------------------------------

upper sequence: GRMZM2G031802_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCCTACCGTGTGCTTTATATCCTTAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaaagatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccag
 |  |||||||   | || ||||| |||||||| ||||| |||||||||||||| || ||||| |||||||||||||||     ||    |  || |  || | |    ||   |   |        | | | |||  ||||     ||||       | |||        | | ||    | |                                    
GGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAAgtatgttcctctctctctctcaaccttcact----gagcatctgtttattttcctcctaattggatta-----gtttttgtcaactattgcaact--tatgactaaaaatg-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7136004|gb|AW498376.1|AW498376
EST:     CCCATTTTGTCCACTGGATAA                         GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: CCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: gi|5361053|gb|AI795668.1|AI795668
EST:     TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA                         GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: gi|71425662|gb|DR806812.1|DR806812
EST:     TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA                         GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: gi|211132529|gb|FL458973.1|FL458973
EST:     TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA                         GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: gi|60356812|gb|DN223785.1|DN223785
EST:     TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA                         GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: gi|71425663|gb|DR806813.1|DR806813
EST:     TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA                         GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT