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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGTCTCGGAGGCGTGCCGACGGATGGCGGCGAGGCGGGTCGATGCCGTTCTGCTCACAGACGCCGGTGGCCTGCTCTCAGGCATCGTCACCGACAAGgtaccgtgttccttcagttacatcagttttgaatctgttgtaccaaacatgttatgattggctggtaagttgtttcgaacttagaaggaatgaactttat...

Basic information

species Zea mays
transcript GRMZM2G031609_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 2
CACGGTCTCGGAGGCGTGCCGACGGATGGCGGCGAGGCGGGTCGATGCCGTTCTGCTCACAGACGCCGGTGGCCTGCTCTCAGGCATCGTCACCGACAAGgtaccgtgttccttcagttacatcagttttgaatctgttgtaccaaacatgttatgattggctggtaagttgtttcgaacttagaaggaatgaactttat------
 |||||  ||||||| ||||  ||||||||||||||| |||| || ||||| |||||||| ||||||   ||  | ||||| |||||||||||||| || |||   | |||||    |||  | | |||| ||     | |   |    | || | |   ||||| | || ||| |||      ||  | ||   |||        
GACGGTGGCGGAGGCTTGCCAGCGGATGGCGGCGAGGAGGGTGGACGCCGTGCTGCTCACGGACGCCAACGGATTACTCTCCGGCATCGTCACCGATAAAgta--attttcctcttcttattttatttttcaaatcaatctgtgatgtgttttctaa---gctgg-aggtggttgcgattggctaataagtgggttttggtataat