Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCGGACACGCGGAAGCTCCACCCCCTCGTCGACGAGTTCATCCCCACCATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCGgtacgtacgcaccgtacgtagcttaattttcgctggtttcggatctgcgtgcgtgcatccatgcatgcatgatgatctaccgacgatgtgctggttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G031200_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g48850.1 (Oryza sativa), 5'ss of exon 2
AGGCCGGACACGCGGAAGCTCCACCCCCTCGTCGACGAGTTCATCCCCACCATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCGgtacgtacgcac--------cgtac-gtagcttaattttcgctggtttcggatctgcg-----tgcgtgcatccatgcatgcat--gatgatctaccgacgatgtgctggtt--ttcag
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AGGCCGGACTCGAGGAAGCTCCACCCTCTCGTCGACGAGTTCATCCCCACCATCGAGGGCGAGAATGGCATCTGCTACACCCATCCCGAGAGGCTTCCCGgtgggtgtaaattcttttttcttacagtggaatcagaatcggtagcttaaaattcttgataaatgagttgatcgttgcgtgcatttgtgggtgtaaataaatttgaaaaattaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148933474|gb|EC877174.2|EC877174EST: CATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCG GTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGG
genomic: CATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCGgtacgtacgc ... tggttttcagGTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCGGACACGCGGAAGCTCCACCCCCTCGTCGACGAGTTCATCCCCACCATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCGgtacgtacgcaccgtacgtagcttaattttcgctggtttcggatctgcgtgcgtgcatccatgcatgcatgatgatctaccgacgatgtgctggttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG