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ATCTTCAGAGTCTGGCTGCTTGTCCATTGTTGTACTAGGCGCTTCTGGAGACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAGgtaagttaatatcactagcggttttgtacttaatatataaagccttcaaacagagaattacaaacaaatgcatagtttgatccatctcttctttggttat...
species | Zea mays |
transcript | GRMZM2G031107_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAG GGATTTCTGCAATCTGGAGAAGTCCATATATTTGGGTACGTAAGATCAAATEST: gi|37425326|gb|CF650403.1|CF650403
genomic: ACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAGgtaagttaat ... atatctacagGGATTTCTGCAATCTGGAGAAGTCCATATATTTGGGTACGCAAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAG GGATTTCTGCAATCTGGAGAAGTCCATATATTTGGGTACGCAAGATCAAATEST: gi|78119964|gb|DV538348.1|DV538348
genomic: ACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAGgtaagttaat ... atatctacagGGATTTCTGCAATCTGGAGAAGTCCATATATTTGGGTACGCAAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAG GGATTTCTGCAATCTGGAGAAGTCCATATATTTGGGTACGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAGgtaagttaat ... atatctacagGGATTTCTGCAATCTGGAGAAGTCCATATATTTGGGTACGCAAGATCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTCAGAGTCTGGCTGCTTGTCCATTGTTGTACTAGGCGCTTCTGGAGACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAGgtaagttaatatcactagcggttttgtacttaatatataaagccttcaaacagagaattacaaacaaatgcatagtttgatccatctcttctttggttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaacaa