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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAAAGGATCTCCACCGAGAAAACCCTAATTCGAACAACCGCGCCGCCGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactgccacgcgaacatctcgtgtcgatccagtcgactagcgccccgcgttcgaactaacctgcttcgtgccgtctcag

Basic information

species Zea mays
transcript GRMZM2G030646_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211231924|gb|FL398739.1|FL398739
EST:     CGTCACCGACTCACCGTCGTCTCTYGCTCACTCGCTCGCNCTCTCCATCC                         AGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
genomic: CGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactg ... gccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
EST: gi|211410717|gb|FL390217.1|FL390217
EST:     CGTCACCGACTCACCGTCGTCTCTYGCTCACTCGCTCGCGCTCTCCATCC                         AGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
genomic: CGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactg ... gccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
EST: gi|211471961|gb|FL417684.1|FL417684
EST:     CGTCACCGACTCACCGTCGTCTCTYGCTCACTCGCTCGCGCTCTCCATCC                         AGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
genomic: CGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactg ... gccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG