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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTAAAAGGACGACCTCTGGCCGCCCTTGTCCCGCCCCGACGCCTCGGTTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaaccctaacttgcttcgatgtttttttcctctgagatttatttgtcgtgggagatctctcgctcgccatgggcaatcagatcctaattctccgggggagaagcgggggagctctactcttgactgcgccctggtactgtgcag

Basic information

species Zea mays
transcript GRMZM2G030422_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76288699|gb|DV028267.1|DV028267
EST:     TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG                         AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: gi|18655046|gb|BM499851.1|BM499851
EST:     TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG                         AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: gi|18662061|gb|BM501725.1|BM501725
EST:     TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG                         AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: gi|71766923|gb|DR964860.1|DR964860
EST:     TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCG                         AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
EST: gi|18662063|gb|BM501726.1|BM501726
EST:     GCATAGGTCGTGGTGCGGCGATCCGCTCCGGGCCTAGGGTTGCG                         AGTAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGA
genomic: GCATAGG-CGTGGTGCGGCGATCCG-TCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAG-AGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGA
EST: gi|18655047|gb|BM499852.1|BM499852
EST:     TTTCCACTGCATAGGCGTGG-GCGGCGATCCG-CCGGGCCTAGGGTTGCG                         AGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG
genomic: TTTCCACTGCATAGGCGTGGTGCGGCGATCCGTCCGGGCCTAGGGTTGCGgtaaggaacc ... tactgtgcagAGAGACACTATAGGGTACGACCCTAGGAGCATCCGCCTCCACGTGGGTGAG