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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTAATGAGCTGAAAGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacacatcagaaccatgtttgcaatactgatgtcccaatcttttagtaggaggtataggtactaatggactgcatatttctgattcag

Basic information

species Zea mays
transcript GRMZM2G030312_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933325|gb|EC876982.2|EC876982
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211410293|gb|FL367092.1|FL367092
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|50323998|gb|CO519124.1|CO519124
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|89758965|gb|DY687943.1|DY687943
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|94478496|gb|EB707454.1|EB707454
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211491894|gb|FL325733.1|FL325733
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|28930930|gb|CB334291.1|CB334291
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211436102|gb|FL365037.1|FL365037
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|71766863|gb|DR964800.1|DR964800
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|148938639|gb|EC882972.2|EC882972
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|78116030|gb|DV534418.1|DV534418
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|148995403|gb|EE034608.2|EE034608
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211004007|gb|FL317935.1|FL317935
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|101382862|gb|EB813485.1|EB813485
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211362581|gb|FL351446.1|FL351446
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGT
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGT
EST: gi|94478060|gb|EB707018.1|EB707018
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211007163|gb|FL335897.1|FL335897
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|71770780|gb|DR968717.1|DR968717
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|89760660|gb|DY688984.1|DY688984
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211085848|gb|FL313539.1|FL313539
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211117480|gb|FL364799.1|FL364799
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|76926865|gb|DV171021.1|DV171021
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|101387368|gb|EB815700.1|EB815700
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|71439951|gb|DR821001.1|DR821001
EST:     AAGGCCCTTAGATGGATCAAGTGAAGA-TGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211520216|gb|FL353890.1|FL353890
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211393521|gb|FL317897.1|FL317897
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211412055|gb|FL337223.1|FL337223
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGA
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGA
EST: gi|149077493|gb|EE166189.2|EE166189
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|91873051|gb|EB403008.1|EB403008
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211284677|gb|FL309995.1|FL309995
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|88757877|gb|DY542018.1|DY542018
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211092010|gb|FL367302.1|FL367302
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|93013418|gb|EB638938.1|EB638938
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGT
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCC-TTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGT
EST: gi|211324643|gb|FL342466.1|FL342466
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211025812|gb|FL325341.1|FL325341
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211467862|gb|FL342140.1|FL342140
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211125338|gb|FL355515.1|FL355515
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|71757784|gb|DR955721.1|DR955721
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211489428|gb|FL342617.1|FL342617
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|71434759|gb|DR815809.1|DR815809
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|28873855|gb|CB329788.1|CB329788
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211283605|gb|FL349540.1|FL349540
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|78075537|gb|DV503971.1|DV503971
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|211185843|gb|FL326890.1|FL326890
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|149063793|gb|EE286381.2|EE286381
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|89251989|gb|DY623775.1|DY623775
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|101395854|gb|EB819854.1|EB819854
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
EST: gi|76934354|gb|DV173837.1|DV173837
EST:     AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAA                         GTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG
genomic: AGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 114

TTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTAATGAGCTGAAAGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTGAGAAGGATGAATTGTTGAAGTCCAAAGATGGTGAAATCAAAGATATGAA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 53

TTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTAATGAGCTGAAAGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTGAGAAGGATGAATTGTTGAAGTCCAAAGATGGTGAAATCAAAGATATGAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 49

TTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTAATGAGCTGAAAGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTGAGAAGGATGAATTGTTGAAGTCCAAAGATGGTGAAATCAAAGATATGAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 73

TTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTAATGAGCTGAAAGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacac ... tctgattcagGTATTGAAGGCCTTGATCTGTCGAGAGATGATTTGGTGAAGCTAGTTCGTGAGAAGGATGAATTGTTGAAGTCCAAAGATGGTGAAATCAAAGATATGAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTAATGAGCTGAAAGACCACGAAAGGGCCTTAGATGGATCAAGTGAAGATTGTCCATCTGGAAgtgagaacacatcagaaccatgtttgcaatactgatgtcccaatcttttagtaggaggtataggtactaatggactgcatatttctgattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA