1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCCAATAGTGAAGCCAGACTACGGGCACACGAAACTCCAACTCGCAAAAGAAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCTgtatgttcgaactttatcagtccattgtcccaatggcttattgctttacatgaatacggggtagttagttttttcataacaaacacaaacctgctgccttttgcataccaagctctgtctcttttattgtaaaaccag
species | Zea mays |
transcript | GRMZM2G030138_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCT GTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCAACCAACTTCTCEST: gi|89763546|gb|DY690690.1|DY690690
genomic: AAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCTgtatgttcga ... gtaaaaccagGTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCAACCAACTTCTC
EST: AAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCT GTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCAACCAACTTCTCEST: gi|71449828|gb|DR830878.1|DR830878
genomic: AAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCTgtatgttcga ... gtaaaaccagGTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCAACCAACTTCTC
EST: AAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCT GTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCCACCAACTTCTC
genomic: AAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCTgtatgttcga ... gtaaaaccagGTTATTGGCCCCTATCGGTCGGGCAAATCTTTTCTTCTCAACCAACTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAATAGTGAAGCCAGACTACGGGCACACGAAACTCCAACTCGCAAAAGAAGGTCTGGAAGCAATTCAGAGGATCAGAACTCCAATAGCTGCTGTTTCTgtatgttcgaactttatcagtccattgtcccaatggcttattgctttacatgaatacggggtagttagttttttcataacaaacacaaacctgctgccttttgcataccaagctctgtctcttttattgtaaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT