Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTCTAGCAGCTCGTATAGTCAGCACAGACCTAGAAGGCCTCCTCCAGATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctgcaccaatattcttgatgccaagtttcgtttcatgttattactatgcatccatggacatcagtcatggtaaaacataaacattagggtgct...

Basic information

species Zea mays
transcript GRMZM2G030072_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030072_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g22430.1 (Oryza sativa), 5'ss of exon 2
ACGGTCTAGCAGCTCGTATAGTCAGCACAGACCTAGAAGGCCTCCTCCAGATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctgcaccaatattcttgatgccaagtttcgtttcatgttattactat--gcatccatggacatcagtcatggtaaaacataaacattagggtgct-
||| |||||||| || || || |||||||| |||||||||||||| || || ||||| |||||||||||||| |||||||| ||||| |||||||||||||||| |  ||||||| | ||||  |||  || | |  | |     | |||||||   |||   ||||  | |  |||| | |  ||  ||  || | | | | 
ACGATCTAGCAGTTCTTACAGCCAGCACAGGCCTAGAAGGCCTCCCCCTGACTTGCCATCATTGCTTCTTCATGGCCGAATTGTTTACATTGGCATGCCGgtatgaattgcacca-tgttctctatgtgaaatattttcttcaagtcttactatttacatatgtggatgtaaaacatgatga--caagaatgttggtgaggtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211078557|gb|FL010812.1|FL010812
EST:     ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCG                         TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
genomic: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
EST: gi|87157696|gb|DY402485.1|DY402485
EST:     ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCG                         TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
genomic: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
EST: gi|9794785|gb|BE553093.1|BE553093
EST:     TTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCG                         TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
genomic: TTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
EST: gi|26558842|gb|CA831077.1|CA831077
EST:     ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGCTTATATTGGCATGCCG                         TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGCTGATGTACCTTGAA
genomic: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA