Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAAgtaaatcgacttctcccctccacacagtacactgttcatcaagaaatcccccccgtttaggaatcacagggttcgaaacgaattaacctgcgggttcttcttctacgattgcag

Basic information

species Zea mays
transcript GRMZM2G029824_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029824_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g02590.4 (Oryza sativa), 5'ss of exon 2
TGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAAgtaaatcgacttctcccctccacacagtacactgttcatcaagaaatcccccccgtttaggaatcacagggttcgaaacgaattaacctgcgggttcttcttctacgattgcag
||||||||||||||||||| |||||||||||| || || || |||||||| || || || ||  ||||||| || |||  ||   || ||   | || | | |         | |||  |||   |   | ||  |||| |   | ||         ||||||   ||      ||| ||| |||||||
TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAGgtatttc---ttttcttttacaaaaatt-------cgaacaaagaattatct--gcttgagaatgatgcgatt--------gttaaccaaagg------cttttacaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32824642|gb|CD964364.1|CD964364
EST:     TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA                         TCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTCGGATCAGTTTGTGTGG
genomic: TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAAgtaaatcgac ... acgattgcagTCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGG
EST: gi|32824901|gb|CD964623.1|CD964623
EST:     TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA                         TCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTCGGATCAGTTTGTGTGG
genomic: TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAAgtaaatcgac ... acgattgcagTCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGG
EST: gi|76010688|gb|DT937858.1|DT937858
EST:     TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA                         TCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGG
genomic: TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAAgtaaatcgac ... acgattgcagTCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGG
EST: gi|32791123|gb|CD943359.1|CD943359
EST:     TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA                         TCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTCGGATCAGTTTGTGTGG
genomic: TCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAAgtaaatcgac ... acgattgcagTCCAAAAACGCGCTGCTTTCGACGTTCTTGTTCTTGGATCAGTTTGTGTGG