1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcag
species | Zea mays |
transcript | GRMZM2G029573_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211087675|gb|FL052572.1|FL052572
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518598|gb|FL052566.1|FL052566
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTKCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTTGAAGATGGATEST: gi|211516228|gb|FL052545.1|FL052545
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211516227|gb|FL052544.1|FL052544
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|148969434|gb|EE020234.2|EE020234
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211087674|gb|FL052571.1|FL052571
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAKGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211516229|gb|FL052546.1|FL052546
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|31361816|gb|CD446173.1|CD446173
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211516233|gb|FL052550.1|FL052550
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211087677|gb|FL052574.1|FL052574
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|89248122|gb|DY619908.1|DY619908
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518588|gb|FL052556.1|FL052556
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211087672|gb|FL052569.1|FL052569
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518587|gb|FL052555.1|FL052555
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGGCCTGCAGAGGGCCTGCGTTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211516232|gb|FL052549.1|FL052549
genomic: GTTGCCACT-GGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211289807|gb|FL254557.1|FL254557
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518594|gb|FL052562.1|FL052562
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518589|gb|FL052557.1|FL052557
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|71764310|gb|DR962247.1|DR962247
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211087676|gb|FL052573.1|FL052573
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211087673|gb|FL052570.1|FL052570
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTTGTCCTGGAAGATGGAEST: gi|211516230|gb|FL052547.1|FL052547
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTC-TTGTCCTGGAAGATGGA
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211287670|gb|FL254548.1|FL254548
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518600|gb|FL052568.1|FL052568
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|31355937|gb|CD440294.1|CD440294
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211516235|gb|FL052552.1|FL052552
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211516231|gb|FL052548.1|FL052548
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518596|gb|FL052564.1|FL052564
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518597|gb|FL052565.1|FL052565
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211518593|gb|FL052561.1|FL052561
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATEST: gi|211287675|gb|FL254553.1|FL254553
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcag
- - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - GATGGA