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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtcttcttctgtttagccacacaattaggaaaagtatcaatataaagaagaagtaagaacaatgtgcttgttttttttcattctttttctttgttgctttgcag

Basic information

species Zea mays
transcript GRMZM2G029566_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10310.2 (Oryza sativa), 5'ss of exon 1
---------------------GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtcttcttctgtttagccacacaattaggaaaagtatcaatataaagaagaagtaagaacaatgtgcttgttttttttcattctttttctttgttgctttgcag---
                     || ||||||||||||||| |||||||||| || ||||| |||| |||||||||||||||||| ||||| ||||| ||||||| |             ||||||  | || ||    ||| |  ||||||   | || |||    || |||   ||  |  |   |  |   |  |   | | ||   |     
ATTTGTTTCGTGTGCATGCAGGAAACGCTCAACATGTTCCTGGGGATGGGGCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacac---------tttagctgctcacttc---aaattcccaatatcttgtagtagtct--actatgctgttagtaatgcacgatgagtagcgcggcttctgccccccaa

upper sequence: GRMZM2G029566_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 2
GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtcttcttctgtttagccacacaattaggaaaagtatcaatataaagaagaagtaagaacaatgtgcttgttttttttcattctttttctttgttgctttgcag---
|| ||||||||||||||| |||||||||| || ||||| |||| |||||||||||||||||| ||||| ||||| ||||||| |             ||||||  | || ||    ||| |  ||||||   | || |||    || |||   ||  |  |   |  |   |  |   | | ||   |     
GAAACGCTCAACATGTTCCTGGGGATGGGGCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAGgtttcacac---------tttagctgctcacttc---aaattcccaatatcttgtagtagtct--actatgctgttagtaatgcacgatgagtagcgcggcttctgccccccaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211277946|gb|FK998815.1|FK998815
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGC-ACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211061692|gb|FK998762.1|FK998762
EST:     CGGCCGGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAAGGAACAAGTGTCTG
genomic: CGGCCGG-CGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGA-GGAACAAGTGTCTG
EST: gi|71328229|gb|DR800748.1|DR800748
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274322|gb|FK998789.1|FK998789
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|149044247|gb|EE047493.2|EE047493
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211277951|gb|FK998820.1|FK998820
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274317|gb|FK998784.1|FK998784
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|29577168|gb|CB617280.1|CB617280
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211061689|gb|FK998759.1|FK998759
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACT
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACT
EST: gi|149083775|gb|EE173140.2|EE173140
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272515|gb|FK998777.1|FK998777
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|149101399|gb|EE187518.2|EE187518
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148969714|gb|EE020586.2|EE020586
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272511|gb|FK998773.1|FK998773
EST:     CGACCGGCGTTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CGGCCGGCGT-GGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211277944|gb|FK998813.1|FK998813
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|60348819|gb|DN215792.1|DN215792
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211061694|gb|FK998764.1|FK998764
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276144|gb|FK998808.1|FK998808
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274329|gb|FK998796.1|FK998796
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272505|gb|FK998767.1|FK998767
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|149004521|gb|EE039090.2|EE039090
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276140|gb|FK998804.1|FK998804
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272513|gb|FK998775.1|FK998775
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276135|gb|FK998799.1|FK998799
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|149082178|gb|EE171359.2|EE171359
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211277948|gb|FK998817.1|FK998817
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|91052883|gb|EB163301.1|EB163301
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148990772|gb|EE032185.2|EE032185
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148932701|gb|EC876670.2|EC876670
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276139|gb|FK998803.1|FK998803
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148940815|gb|EC885642.2|EC885642
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148964333|gb|EC905725.2|EC905725
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211061690|gb|FK998760.1|FK998760
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274321|gb|FK998788.1|FK998788
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGT
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGT
EST: gi|211276134|gb|FK998798.1|FK998798
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|78124353|gb|DV542737.1|DV542737
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTATCAC                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148956082|gb|EC901838.2|EC901838
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274320|gb|FK998787.1|FK998787
EST:     CCGGCCGGCGTGGANGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAACC-GTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGT
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGT
EST: gi|148955041|gb|EC900548.2|EC900548
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272519|gb|FK998781.1|FK998781
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148983240|gb|EE029206.2|EE029206
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276145|gb|FK998809.1|FK998809
EST:     CGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAGAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAA-AATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274316|gb|FK998783.1|FK998783
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGC-ACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTNCGTGACAACGAAGCACTGAGGAACA
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACA
EST: gi|211277950|gb|FK998819.1|FK998819
EST:     CCGGACGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGAC
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGAC
EST: gi|149076833|gb|EE165488.2|EE165488
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|149042087|gb|EE047065.2|EE047065
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276137|gb|FK998801.1|FK998801
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276141|gb|FK998805.1|FK998805
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAAGCACTGAGGAACAAGTGTCTG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAA-GCACTGAGGAACAAGTGTCTG
EST: gi|148949167|gb|EC894603.2|EC894603
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211274325|gb|FK998792.1|FK998792
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|71421618|gb|DR805518.1|DR805518
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148941367|gb|EC886277.2|EC886277
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148959990|gb|EE153229.2|EE153229
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|76920587|gb|DV168250.1|DV168250
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272514|gb|FK998776.1|FK998776
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|149009361|gb|EE041411.2|EE041411
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|148946154|gb|EC891448.2|EC891448
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272510|gb|FK998772.1|FK998772
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272518|gb|FK998780.1|FK998780
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211272507|gb|FK998769.1|FK998769
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276146|gb|FK998810.1|FK998810
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|211276138|gb|FK998802.1|FK998802
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCYACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGAC
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGAC
EST: gi|211277956|gb|FK998825.1|FK998825
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGT
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGT
EST: gi|211277943|gb|FK998812.1|FK998812
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
EST: gi|89764162|gb|DY691069.1|DY691069
EST:     CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAG                         CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG
genomic: CCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 103

GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 99

GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 70

GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 669

GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtc ... tgctttgcagCCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGACGCTCAACATGTTCTTGGGGATGGGCCGGCCGGCGTGGAGGGAGGCGCGCGCCACGCTACAGAAAATCCTATCAGgttccgagtcttcttctgtttagccacacaattaggaaaagtatcaatataaagaagaagtaagaacaatgtgcttgttttttttcattctttttctttgttgctttgcag

- - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - -  TGGAGG