1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGCCCAAACCGTTGGAATGGGGGCAGAAGCTCAGAGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaaacctctattagtatatacacgtttttttcatctctcctgcttttgcagtacttatttatagtccacaagcgatcatctttccaaagagtagtggttacgctaaaactttcctttgtactggttaatctag
species | Zea mays |
transcript | GRMZM2G029543_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211110285|gb|FL406914.1|FL406914
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAEST: gi|211093033|gb|FL191900.1|FL191900
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCA
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGAACAAAAGAAAAGCTTGACTCEST: gi|211358098|gb|FL283155.1|FL283155
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|74238242|gb|DT646156.1|DT646156
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211358101|gb|FL283158.1|FL283158
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|50325147|gb|CO520273.1|CO520273
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|148981115|gb|EE027433.2|EE027433
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|6020995|gb|AW065923.1|AW065923
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAA-GAAATCCTTGG AT-TGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211358094|gb|FL283151.1|FL283151
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211360758|gb|FL283169.1|FL283169
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGANATCCTTGG ATATGAYTTGCTGGATCTTTTGCACCAATGGACCAAEST: gi|50332728|gb|CO527854.1|CO527854
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTT-GCACCAATGGACCAA
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211360760|gb|FL283171.1|FL283171
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211410540|gb|FL395924.1|FL395924
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCWAATGAAATCCTTGG ATATGACTTGCTGGATCTTCGCACCAATGGAC-AAAAGAEST: gi|50327094|gb|CO522220.1|CO522220
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGA
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|31405538|gb|CD484270.1|CD484270
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|148978294|gb|EE026146.2|EE026146
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211360753|gb|FL283164.1|FL283164
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211358100|gb|FL283157.1|FL283157
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211358099|gb|FL283156.1|FL283156
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211360757|gb|FL283168.1|FL283168
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTAGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|71425519|gb|DR806724.1|DR806724
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|149084595|gb|EE174069.2|EE174069
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211358096|gb|FL283153.1|FL283153
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGGACCAAAAGAAAAGCTTGACTEST: gi|211360754|gb|FL283165.1|FL283165
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGG-ACCAAAAGAAAAGCTTGACT
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211360756|gb|FL283167.1|FL283167
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCACATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|149073767|gb|EE162081.2|EE162081
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|149042020|gb|EE046994.2|EE046994
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|149110774|gb|EE190602.2|EE190602
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|148934170|gb|EC878191.2|EC878191
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|149081210|gb|EE170319.2|EE170319
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211360759|gb|FL283170.1|FL283170
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCEST: gi|211014086|gb|FL389871.1|FL389871
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAA-GCTTGACTCEST: gi|67016630|gb|CO445379.1|CO445379
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCCCAAACCGTTGGAATGGGGGCAGAAGCTCAGAGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaaacctctattagtatatacacgtttttttcatctctcctgcttttgcagtacttatttatagtccacaagcgatcatctttccaaagagtagtggttacgctaaaactttcctttgtactggttaatctag
- - - - - - - - - - - - - - - - - - - - - - GCAGCT