1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGCATCAAGGGAAGGATCAACAGGGCCGTTTGGGGCCCGCTGAACAGGACCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAGgtcaggatatcatgctgatagagtaactccagtagttctctaatgatgtctttgattgcgggacagctgggacagccacgttcccgtcgtcccttatcat...
species | Zea mays |
transcript | GRMZM2G028834_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAG ACTGGACAGCTGCTGAAAGAGTCCTGATAAAGAATCTGGACATCAGAAGACEST: gi|91052407|gb|EB162825.1|EB162825
genomic: CCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAGgtcaggatat ... ttgtatgtagACTGGACAGCTGCTGAAAGAGTC-TGATAAAGAATCTGGACATCAGAAGAC
EST: CCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAG ACTGGACAGCTGCTGAAAGAGTCTGATAAAGAATCTEST: gi|149094593|gb|EE180124.2|EE180124
genomic: CCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAGgtcaggatat ... ttgtatgtagACTGGACAGCTGCTGAAAGAGTCTGATAAAGAATCT
EST: CCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAG ACTGGACAGCTGCTGAAAGAGTCTGATAAAGAATCTGGACATCAGAAGACC
genomic: CCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAGgtcaggatat ... ttgtatgtagACTGGACAGCTGCTGAAAGAGTCTGATAAAGAATCTGGACATCAGAAGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCATCAAGGGAAGGATCAACAGGGCCGTTTGGGGCCCGCTGAACAGGACCATTATCACTGCCGGGGAGGATGCCACCATTCGCATCTGGGACTCAGAGgtcaggatatcatgctgatagagtaactccagtagttctctaatgatgtctttgattgcgggacagctgggacagccacgttcccgtcgtcccttatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG