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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacgtataatagaggaaatttcaaaagaaaaatgtaaacagaaacatctttgtgacaacataaaaatgtggcccacatgtcaggctcatagcgt...

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g62900.1 (Oryza sativa), 5'ss of exon 2
GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacgtataatagaggaaatttcaaaagaaaaatgtaaacagaaac-atctttgtgacaa-cataaaaatgtggcccacatg-tcaggctcatagcgt
|| ||||| |||||||| |||||   ||||||||| ||||| ||||| ||||||||| |||| |||||||||||| ||          | |     || | | ||   ||||     |  |||     |||||  || ||     |  |  ||    || | |   ||  ||   
GTCGGCACCGCTGTTGTGACTGGGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAGgta-aactttccccccaaatttttttaccagaggttaatgctctgaccaaccgagcttgtgctaatcagtgtcagttaaccggtgtgataaatttcccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211510200|gb|FL110015.1|FL110015
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGTATG
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATG
EST: gi|74239241|gb|DT647155.1|DT647155
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGGATGAGGTGATTCTGGTAACCTCAGGA
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
EST: gi|88755722|gb|DY539863.1|DY539863
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
EST: gi|6021065|gb|AW065993.1|AW065993
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
EST: gi|149066720|gb|EE286861.2|EE286861
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
EST: gi|74245732|gb|DT653646.1|DT653646
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
EST: gi|101391687|gb|EB817780.1|EB817780
EST:     GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG                         GTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA
genomic: GCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacg ... tcatatgcagGTGAAGCAACTGAATTTTCAAGGGTATGAGGTGATTCTGGTAACCTCAGGA