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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGGTATGACGTGGAGGAGAAGGCCGCGAGGGCATATGACCTGGCGGCGCTCAAGTACTGGGGGACGTCCACGCACGTGAATTTCCCGgtaatgaaccgaagacaacgatagtctgagtctgagaatggtgttgtcttgttcacaatgtgtgctgattgatgatcttggtgttgtccattttaacgcgccgcgcggagtcag

Basic information

species Zea mays
transcript GRMZM2G028151_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028151_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 5'ss of exon 4
GCGGGTATGACGTGGAGGAGAAGGCCGCGAGGGCATATGACCTGGCGGCGCTCAAGTACTGGGGGACGTCCACGCACGTGAATTTCCCGgtaat-gaaccgaagacaacgatagtctgagtctgagaatggtgttgtct-tgttcacaatgtgtgctgattgatgatcttggtgttgtccattttaacgcgccgcgcggagtcag-----------------------------------------------------
| ||||||||| ||||||||||||| || ||||| ||||| || || |||||||||||||||||  | ||||||||| | || |||||||| ||  ||      ||   |||    | | | ||    |  | |||        ||  |    |  |  || | ||| || | || |     |  |  || | | |                                                              
GTGGGTATGACATGGAGGAGAAGGCTGCCAGGGCGTATGATCTTGCTGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtgattaaattaccaactctgattagttca-tttgttgcttttcttgcaagcaaacagtacacattttagttta-gattttagagt-gctagctcaagggcactgtgaatgactgtagttatgatgttacggctatcattgacgtttgttttcaccattttctgggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092257|gb|DV520631.1|DV520631
EST:     ACCTGGCGGCGCTCAAGTACTGGGGGACGTCCACGCACGTGAATTTCCCG                         GTGGAGGACTACAGGGAAGAGCTGGAGGAGATGAAGAACATGACCAGACAG
genomic: ACCTGGCGGCGCTCAAGTACTGGGGGACGTCCACGCACGTGAATTTCCCGgtaatgaacc ... gcggagtcagGTGGAGGACTACAGGGAAGAGCTGGAGGAGATGAAGAACATGACCAGACAG
EST: gi|76012118|gb|DT939288.1|DT939288
EST:     ACCTGGCGGCGCTCAAGTACTGGGGGACGTCCACGCACGTGAATTTCCCG                         GTGGAGGACTACAGGGAAGAGCTGGAGGAGATGAAGAACATGACCAGACAG
genomic: ACCTGGCGGCGCTCAAGTACTGGGGGACGTCCACGCACGTGAATTTCCCGgtaatgaacc ... gcggagtcagGTGGAGGACTACAGGGAAGAGCTGGAGGAGATGAAGAACATGACCAGACAG