1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttccaagtgaacagttactttatcttgtgtatttgtttgtgggggttagtttttgagtcaggcttaatgtgtaaaagccaattcaacgattcat...
species | Zea mays |
transcript | GRMZM2G028096_T03 |
intron # | 2 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGEST: gi|211342903|gb|FL126052.1|FL126052
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAG
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGEST: gi|211342892|gb|FL126041.1|FL126041
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAG
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGC-AAAGCCAAAGEST: gi|211340510|gb|FL126039.1|FL126039
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAG
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAG
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttccaagtgaacagttactttatcttgtgtatttgtttgtgggggttagtttttgagtcaggcttaatgtgtaaaagccaattcaacgattcat
- - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG