Sequence
atgc intronic sequence ATGC exonic sequenceCAAAATGCCACTCAAACAACTACACCTGTCCCCCCTGCTGCTCCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatgaggtgcttaatgatctctcaatttatgttgaatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g39300.1 (Oryza sativa), 5'ss of exon 6
CAAAATGCCACTCAAACAACTACACCTGTCCCCC---CTGCTGCTCCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatg-aggtgcttaatgatctctcaattt-atgttgaatag
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---ACTGCTAATCAATCAATTCCACCACCACCTGTTGCTGCTGCTCCAGATGCACGCACACAAGAAATGATTGATGAAAAACTCAAAAAGGCAGAAGAACTAGgt-ttgattttttttaatcatgct---ccctatatattccttccttgaactaccaaa-gcacatg-----------gctcattgtcttctgttcatcgttaatatacaaaaattcattaatttctagcttccatattgaacag
upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G03340.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAATGCCACTCAAAC--AACTACACCTGTCCCCCCTGCTGCT-CCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatgaggtgcttaatgatctctcaatttatgttgaatag
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---CAGCCCGTTCCAGCTCAACCACCATCTTCCGAATTACCTCCACCGGATCCTCGCACTCAAGAAATGATAAATGAGAAACTGAAGAAGGCAGAAGATCTTGgta--agggaaataaccctaatttgtgtttggttatttgtctatggtcat--cttaatttagagctc-attgtagtggaaagttgaaactgcttaaatat-ccacg-----------------------------------
upper sequence: GRMZM2G028096_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 6
---CAAAATGCCACTCAAACAACTACACCTGTCCCCCCTGCTGCTCCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatgaggtgcttaatgatctctcaatttatgttgaatag
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CTTCCAAAC-CCGCCCCCATTGGCACCCTTGCCAGTACT--TGCTCCTGATCCTCGTACACAGGAAATGATAAATGAGAAGCTGAAAAAGGCAGAGGATCTTGgtaagctaagtcagc-cttttcatgccttttatattt-------------cgataaatcttgatgttctgttgcataccaaatatatt-----tgttagtggagtgcaatggaaaatag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|50324674|gb|CO519800.1|CO519800EST: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAG GTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAG
genomic: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctacct ... tgttgaatagGTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAATGCCACTCAAACAACTACACCTGTCCCCCCTGCTGCTCCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatgaggtgcttaatgatctctcaatttatgttgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC