1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTGTGACCGAGGAGGTAGTGGTGTTCGTCGGTAACATCTCAAAGCATCCGAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATGgtaagagccagtgtcatcagattggaacgcttgaactgtttattttgttgctttaattcatagatggtggaacctattgttttggtgcgattgtgtgctc...
species | Zea mays |
transcript | GRMZM2G027535_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATG ATTTTGAACTATCAGATGAACAGTATGGACATGCAGTTGCTATAGAGCGGCEST: gi|4572819|gb|AI586468.1|AI586468
genomic: GAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATGgtaagagcca ... tgttttttagATTTTGAACTATCAGATGAACAGTATGGACATGCAGTTGCTATAGAGCGGC
EST: GAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATG ATTTTGAACTATCEST: gi|20208306|gb|BQ134395.1|BQ134395
genomic: GAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATGgtaagagcca ... tgttttttagATTTTGAACTATC
EST: GACACGCAGATG ATTTTGAACTATCAGATGAATCAGTATGGACATGCAGTTGCTATAGAGCGGEST: gi|91878682|gb|EB408639.1|EB408639
genomic: GACACGCAGATGgtaagagcca ... tgttttttagATTTTGAACTATCAGATGAA-CAGTATGGACATGCAGTTGCTATAGAGCGG
EST: GAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCACATG ATTTTGAACTATCAGATGAACAGTATGGACCTGCCGTTGCTATAGAGCGGC
genomic: GAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATGgtaagagcca ... tgttttttagATTTTGAACTATCAGATGAACAGTATGGACATGCAGTTGCTATAGAGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTGACCGAGGAGGTAGTGGTGTTCGTCGGTAACATCTCAAAGCATCCGAAGACATGGCTCGATTTCCCCTTGTTTGTTGATGACCGACACGCAGATGgtaagagccagtgtcatcagattggaacgcttgaactgtttattttgttgctttaattcatagatggtggaacctattgttttggtgcgattgtgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG