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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCGgtatttttttcacacttcaacattttggggatttggtatccttttcactcttgtacatcgttatctatcggtttccttggaaatctacgatccactattc...

Basic information

species Zea mays
transcript GRMZM2G026869_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026869_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g40700.2 (Oryza sativa), 5'ss of exon 2
ATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCGgtatttttttcacacttcaacattttggggatttggtatccttttcactcttgtac--atcgttatctatcggtttccttggaaat-ctacgatccactattc
||||||||| || ||  |||||| |||| |||||||||| ||   ||| |||||||| || |||||||||||||| || ||||||||||||| |||||||||| ||| ||    ||   || ||||  |  || | |    |||| |    |   |  |     |   || |   || ||  |     |   ||    |||  
ATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGgtaatttgttgttgctc--acctttttagttttcgctcgtattttgaacagtaagccaaaaaagagtgattgtgatcattacatgcattgtcatttgttatc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194738|gb|AW146842.1|AW146842
EST:     TNNNNNNNCGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCG                         GTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC
genomic: TAAAAAAACGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCGgtattttttt ... attttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC
EST: gi|78118115|gb|DV536502.1|DV536502
EST:     TNNNNNNNCGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCG                         GTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC
genomic: TAAAAAAACGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCGgtattttttt ... attttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC