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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGGCGAACCTTATCGGTTATTGCTGCGACGGCGACGATCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccctctcgtgctctgcagttcgttgcctgtatgtaccatttgatcatgttccaaagatcggcactcgctgctatgctaatgcagtgcaattctg...

Basic information

species Zea mays
transcript GRMZM2G026767_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 2
AGCATGGCGAACCTTATCGGTTATTGCTGCGACGGCGACGATCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccctctcgtgctctgcagttcgttgcctgtatgtaccatttgatcatgttccaaagatcggcactcgctgcta-tgctaa-tgcagtgcaattctg---
|| ||||| ||||| ||||| || ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |   | | | || || | |  |||   |     ||   |  | || ||||         || | | || |  ||| || |      |  |||||   
AGGATGGCCAACCTCATCGGCTACTGCTGCGACGGCGACGAGCGGCTCCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcctccct-ccctccactcccctgcaatttaactccgggtctttatattccc----ctcccatttgatgatcctgccaactattcgacccttctggtc

upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
AGCATGGCGAACCTTATCGGTTATTGCTGCGACGGCGACGATCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccctctcgtgctctgcagttcgttgcctgtatgtaccatttgatcatgttccaaagatcggcactcgctgctatgctaatgcagtgcaattctg
||  | || |   | |||||||  |||||||||||||| ||  | || ||||| ||||||| |||||| || || || || |||||||| ||||||||||||  |     ||  | ||||    ||  ||   |     |  |  ||| | || |            || ||  |  |    |  | || |   |||| |
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttct-ctctctttttttttttttaatctttactcttgtttatctcatcttttcattcattcattcattcattgtttcatt--tattcag

upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
AGCATGGCGAACCTTATCGGTTATTGCTGCGACGGCGACGATCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccc-tctcgtgctctgcagttcgttgcctgtatgt--accatttgatcatgttccaaagatcggcactcgctgctatgctaatgcagtgcaattctg
||  | || ||  | |||||||| |||||||||||||| ||  | || ||||| ||||||| |||||| || ||||| || |||||||| || |||||||||  | |   |||| ||    | |||   |  | | | |||  |   ||||||  |  | ||  ||| |  | ||  || |    | || |||          
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgat--tcattcattgattg--attcattgattgattgattcag----------